2ej6: Difference between revisions

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New page: left|200px<br /><applet load="2ej6" size="350" color="white" frame="true" align="right" spinBox="true" caption="2ej6, resolution 2.06Å" /> '''Crystal analysis of ...
 
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[[Image:2ej6.jpg|left|200px]]<br /><applet load="2ej6" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2ej6, resolution 2.06&Aring;" />
'''Crystal analysis of delta1-pyrroline-5-carboxylate dehydrogenase from Thermus thermophilus with bound D-proline'''<br />


==About this Structure==
==Crystal analysis of delta1-pyrroline-5-carboxylate dehydrogenase from Thermus thermophilus with bound D-proline==
2EJ6 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] with <scene name='pdbligand=ACT:'>ACT</scene>, <scene name='pdbligand=NA:'>NA</scene>, <scene name='pdbligand=DPR:'>DPR</scene> and <scene name='pdbligand=MPD:'>MPD</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/1-pyrroline-5-carboxylate_dehydrogenase 1-pyrroline-5-carboxylate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.1.12 1.5.1.12] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJ6 OCA].
<StructureSection load='2ej6' size='340' side='right'caption='[[2ej6]], [[Resolution|resolution]] 2.06&Aring;' scene=''>
[[Category: 1-pyrroline-5-carboxylate dehydrogenase]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[2ej6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EJ6 FirstGlance]. <br>
[[Category: Thermus thermophilus]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.06&#8491;</td></tr>
[[Category: Inagaki, E.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=DPR:D-PROLINE'>DPR</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ej6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ej6 OCA], [https://pdbe.org/2ej6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ej6 RCSB], [https://www.ebi.ac.uk/pdbsum/2ej6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ej6 ProSAT], [https://www.topsan.org/Proteins/RSGI/2ej6 TOPSAN]</span></td></tr>
[[Category: Sakamoto, K.]]
</table>
[[Category: Yokoyama, S.]]
== Function ==
[[Category: ACT]]
[https://www.uniprot.org/uniprot/Q5SI02_THET8 Q5SI02_THET8]  
[[Category: DPR]]
== Evolutionary Conservation ==
[[Category: MPD]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: NA]]
Check<jmol>
[[Category: enzyme-inhibitor complex]]
  <jmolCheckbox>
[[Category: national project on protein structural and functional analyses]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ej/2ej6_consurf.spt"</scriptWhenChecked>
[[Category: nppsfa]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: oxidoreductase]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: riken structural genomics/proteomics initiative]]
  </jmolCheckbox>
[[Category: rsgi]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ej6 ConSurf].
[[Category: structural genomics]]
<div style="clear:both"></div>


''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:33:02 2008''
==See Also==
*[[Pyrroline-5-carboxylate dehydrogenase|Pyrroline-5-carboxylate dehydrogenase]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermus thermophilus HB8]]
[[Category: Inagaki E]]
[[Category: Sakamoto K]]
[[Category: Yokoyama S]]

Latest revision as of 11:41, 25 October 2023

Crystal analysis of delta1-pyrroline-5-carboxylate dehydrogenase from Thermus thermophilus with bound D-prolineCrystal analysis of delta1-pyrroline-5-carboxylate dehydrogenase from Thermus thermophilus with bound D-proline

Structural highlights

2ej6 is a 2 chain structure with sequence from Thermus thermophilus HB8. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.06Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q5SI02_THET8

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2ej6, resolution 2.06Å

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