2e8z: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2e8z.png|left|200px]]
-{{STRUCTURE_2e8z|  PDB=2e8z  |  SCENE=  }}
+==Crystal structure of pullulanase type I from Bacillus subtilis str. 168 complexed with alpha-cyclodextrin==
+<StructureSection load='2e8z' size='340' side='right'caption='[[2e8z]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-===Crystal structure of pullulanase type I from Bacillus subtilis str. 168 complexed with alpha-cyclodextrin===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2e8z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E8Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2E8Z FirstGlance]. <br>
-{{ABSTRACT_PUBMED_16582490}}
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PRD_900015:alpha-cyclodextrin'>PRD_900015</scene></td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2e8z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e8z OCA], [https://pdbe.org/2e8z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2e8z RCSB], [https://www.ebi.ac.uk/pdbsum/2e8z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2e8z ProSAT]</span></td></tr>
-[[2e8z]] is a 2 chain structure of [[Alpha-Amylase]] with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E8Z OCA].
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PULA_BACSU PULA_BACSU]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e8/2e8z_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2e8z ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Alpha-Amylase|Alpha-Amylase]]
+*[[Amylase 3D structures|Amylase 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:016582490</ref><references group="xtra"/>
 [[Category: Bacillus subtilis]]
-[[Category: Pullulanase]]
+[[Category: Large Structures]]
-[[Category: Iwamoto, H.]]
+[[Category: Iwamoto H]]
-[[Category: Katsuya, Y.]]
+[[Category: Katsuya Y]]
-[[Category: Malle, D.]]
+[[Category: Malle D]]
-[[Category: Mikami, B.]]
+[[Category: Mikami B]]
-[[Category: Utsumi, S.]]
+[[Category: Utsumi S]]
-[[Category: Alpha-amylase-family]]
-[[Category: Alpha-cyclodextrin]]
-[[Category: Beta-alpha-barrel]]
-[[Category: Hydrolase]]
-[[Category: Multiple domain]]