2dvb: Difference between revisions

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 ==Crystal structure of peanut lectin GAl-beta-1,6-GalNAc complex==
-<StructureSection load='2dvb' size='340' side='right' caption='[[2dvb]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
+<StructureSection load='2dvb' size='340' side='right'caption='[[2dvb]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2dvb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DVB FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2dvb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DVB FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene><br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2pel|2pel]], [[2tep|2tep]], [[1v6i|1v6i]], [[1v6j|1v6j]], [[1v6k|1v6k]], [[2dh1|2dh1]], [[2dv9|2dv9]], [[2dva|2dva]], [[2dvd|2dvd]], [[2dvf|2dvf]], [[2dvg|2dvg]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dvb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dvb RCSB], [http://www.ebi.ac.uk/pdbsum/2dvb PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dvb OCA], [https://pdbe.org/2dvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dvb RCSB], [https://www.ebi.ac.uk/pdbsum/2dvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dvb ProSAT]</span></td></tr>
-<table>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/LECG_ARAHY LECG_ARAHY] D-galactose specific lectin.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/2dvb_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/2dvb_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dvb ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 25: / Line 28: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 2dvb" style="background-color:#fffaf0;"></div>
 ==See Also==
+*[[Agglutinin 3D structures|Agglutinin 3D structures]]
 *[[Galactose-binding lectin|Galactose-binding lectin]]
 == References ==
@@ Line 33: / Line 38: @@
 </StructureSection>
 [[Category: Arachis hypogaea]]
-[[Category: Jayaraman, N.]]
+[[Category: Large Structures]]
-[[Category: Mitra, N.]]
+[[Category: Jayaraman N]]
-[[Category: Natchiar, S K.]]
+[[Category: Mitra N]]
-[[Category: Srinivas, O.]]
+[[Category: Natchiar SK]]
-[[Category: Surolia, A.]]
+[[Category: Srinivas O]]
-[[Category: Vijayan, M.]]
+[[Category: Surolia A]]
-[[Category: Agglutinin]]
+[[Category: Vijayan M]]
-[[Category: Carbohydrate specificity]]
-[[Category: Legume lectin]]
-[[Category: Open quaternary structure]]
-[[Category: Sugar binding protein]]