2dec: Difference between revisions

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[[Image:2dec.png|left|200px]]


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==Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3==
The line below this paragraph, containing "STRUCTURE_2dec", creates the "Structure Box" on the page.
<StructureSection load='2dec' size='340' side='right'caption='[[2dec]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2dec]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DEC FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
{{STRUCTURE_2dec|  PDB=2dec  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dec FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dec OCA], [https://pdbe.org/2dec PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dec RCSB], [https://www.ebi.ac.uk/pdbsum/2dec PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dec ProSAT], [https://www.topsan.org/Proteins/RSGI/2dec TOPSAN]</span></td></tr>
 
</table>
===Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3===
== Function ==
 
[https://www.uniprot.org/uniprot/O58246_PYRHO O58246_PYRHO]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2DEC is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEC OCA].  
Check<jmol>
[[Category: Pyrococcus horikoshii]]
  <jmolCheckbox>
[[Category: Kunishima, N.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2dec_consurf.spt"</scriptWhenChecked>
[[Category: Mizutani, H.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: National project on protein structural and functional analyse]]
  </jmolCheckbox>
[[Category: Nppsfa]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dec ConSurf].
[[Category: Riken structural genomics/proteomics initiative]]
<div style="clear:both"></div>
[[Category: Rsgi]]
__TOC__
[[Category: Structural genomic]]
</StructureSection>
 
[[Category: Large Structures]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:58:47 2008''
[[Category: Pyrococcus horikoshii OT3]]
[[Category: Kunishima N]]
[[Category: Mizutani H]]

Latest revision as of 11:25, 25 October 2023

Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3

Structural highlights

2dec is a 2 chain structure with sequence from Pyrococcus horikoshii OT3. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.7Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

O58246_PYRHO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2dec, resolution 1.70Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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