2dec: Difference between revisions

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-{{Seed}}
-[[Image:2dec.png|left|200px]]
-<!--
+==Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3==
-The line below this paragraph, containing "STRUCTURE_2dec", creates the "Structure Box" on the page.
+<StructureSection load='2dec' size='340' side='right'caption='[[2dec]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2dec]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DEC FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-{{STRUCTURE_2dec|  PDB=2dec  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dec FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dec OCA], [https://pdbe.org/2dec PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dec RCSB], [https://www.ebi.ac.uk/pdbsum/2dec PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dec ProSAT], [https://www.topsan.org/Proteins/RSGI/2dec TOPSAN]</span></td></tr>
+</table>
-===Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3===
+== Function ==
+[https://www.uniprot.org/uniprot/O58246_PYRHO O58246_PYRHO]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-DEC is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEC OCA].
+Check<jmol>
-[[Category: Pyrococcus horikoshii]]
+  <jmolCheckbox>
-[[Category: Single protein]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2dec_consurf.spt"</scriptWhenChecked>
-[[Category: Kunishima, N.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Mizutani, H.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+  </jmolCheckbox>
-[[Category: National project on protein structural and functional analyse]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dec ConSurf].
-[[Category: Nppsfa]]
+<div style="clear:both"></div>
-[[Category: Riken structural genomics/proteomics initiative]]
+__TOC__
-[[Category: Rsgi]]
+</StructureSection>
-[[Category: Structural genomic]]
+[[Category: Large Structures]]
+[[Category: Pyrococcus horikoshii OT3]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 06:12:33 2008''
+[[Category: Kunishima N]]
+[[Category: Mizutani H]]