2d30: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:


==Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) from Bacillus Anthracis at 2.40A Resolution==
==Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) from Bacillus Anthracis at 2.40A Resolution==
<StructureSection load='2d30' size='340' side='right' caption='[[2d30]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='2d30' size='340' side='right'caption='[[2d30]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2d30]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_cereus_var._anthracis"_(cohn_1872)_smith_et_al._1946 "bacillus cereus var. anthracis" (cohn 1872) smith et al. 1946]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D30 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D30 FirstGlance]. <br>
<table><tr><td colspan='2'>[[2d30]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D30 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D30 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cdd-2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1392 "Bacillus cereus var. anthracis" (Cohn 1872) Smith et al. 1946])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cytidine_deaminase Cytidine deaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.5 3.5.4.5] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d30 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d30 OCA], [https://pdbe.org/2d30 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d30 RCSB], [https://www.ebi.ac.uk/pdbsum/2d30 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d30 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d30 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d30 OCA], [http://pdbe.org/2d30 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2d30 RCSB], [http://www.ebi.ac.uk/pdbsum/2d30 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2d30 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/A0A6L7GZQ8_BACAN A0A6L7GZQ8_BACAN] This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.[ARBA:ARBA00003949][RuleBase:RU364006]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 21: Line 22:


==See Also==
==See Also==
*[[Deaminase|Deaminase]]
*[[Deaminase 3D structures|Deaminase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Cytidine deaminase]]
[[Category: Bacillus anthracis]]
[[Category: Blagova, E V]]
[[Category: Large Structures]]
[[Category: Brannigan, J A]]
[[Category: Blagova EV]]
[[Category: Fogg, M J]]
[[Category: Brannigan JA]]
[[Category: Levdikov, V M]]
[[Category: Fogg MJ]]
[[Category: Moroz, O V]]
[[Category: Levdikov VM]]
[[Category: SPINE, Structural Proteomics in Europe]]
[[Category: Moroz OV]]
[[Category: Wilkinson, A J]]
[[Category: Wilkinson AJ]]
[[Category: Wilson, K S]]
[[Category: Wilson KS]]
[[Category: Hydrolase]]
[[Category: Nucleoside]]
[[Category: Nucleotide]]
[[Category: Purine]]
[[Category: Pyrimidine]]
[[Category: Salvage of nucleosides and nucleotide]]
[[Category: Spine]]
[[Category: Structural genomic]]
[[Category: Structural proteomics in europe]]

Latest revision as of 11:23, 25 October 2023

Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) from Bacillus Anthracis at 2.40A ResolutionCrystal Structure of Cytidine Deaminase Cdd-2 (BA4525) from Bacillus Anthracis at 2.40A Resolution

Structural highlights

2d30 is a 2 chain structure with sequence from Bacillus anthracis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.4Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

A0A6L7GZQ8_BACAN This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.[ARBA:ARBA00003949][RuleBase:RU364006]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2d30, resolution 2.40Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=2d30&oldid=3923699"