2d16: Difference between revisions

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{{Seed}}
[[Image:2d16.png|left|200px]]


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==Crystal Structure of PH1918 protein from Pyrococcus horikoshii OT3==
The line below this paragraph, containing "STRUCTURE_2d16", creates the "Structure Box" on the page.
<StructureSection load='2d16' size='340' side='right'caption='[[2d16]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2d16]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D16 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D16 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
{{STRUCTURE_2d16|  PDB=2d16  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d16 OCA], [https://pdbe.org/2d16 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d16 RCSB], [https://www.ebi.ac.uk/pdbsum/2d16 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d16 ProSAT], [https://www.topsan.org/Proteins/RSGI/2d16 TOPSAN]</span></td></tr>
 
</table>
===Crystal Structure of PH1918 protein from Pyrococcus horikoshii OT3===
== Function ==
 
[https://www.uniprot.org/uniprot/O59581_PYRHO O59581_PYRHO]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2D16 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii_ot3 Pyrococcus horikoshii ot3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D16 OCA].  
Check<jmol>
[[Category: Pyrococcus horikoshii ot3]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d1/2d16_consurf.spt"</scriptWhenChecked>
[[Category: Kunishima, N.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Lokanath, N K.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
  </jmolCheckbox>
[[Category: Hypothetical]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d16 ConSurf].
[[Category: National project on protein structural and functional analyse]]
<div style="clear:both"></div>
[[Category: Nppsfa]]
__TOC__
[[Category: Riken structural genomics/proteomics initiative]]
</StructureSection>
[[Category: Rsgi]]
[[Category: Large Structures]]
[[Category: Structural genomic]]
[[Category: Pyrococcus horikoshii OT3]]
 
[[Category: Kunishima N]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 02:54:41 2008''
[[Category: Lokanath NK]]

Latest revision as of 11:22, 25 October 2023

Crystal Structure of PH1918 protein from Pyrococcus horikoshii OT3Crystal Structure of PH1918 protein from Pyrococcus horikoshii OT3

Structural highlights

2d16 is a 4 chain structure with sequence from Pyrococcus horikoshii OT3. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.65Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

O59581_PYRHO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2d16, resolution 1.65Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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