1yxm: Difference between revisions

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 ==Crystal structure of peroxisomal trans 2-enoyl CoA reductase==
-<StructureSection load='1yxm' size='340' side='right' caption='[[1yxm]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+<StructureSection load='1yxm' size='340' side='right'caption='[[1yxm]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1yxm]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YXM FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1yxm]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YXM FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADE:ADENINE'>ADE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1w6u|1w6u]], [[1w73|1w73]], [[1w8d|1w8d]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADE:ADENINE'>ADE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pecr ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yxm OCA], [https://pdbe.org/1yxm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yxm RCSB], [https://www.ebi.ac.uk/pdbsum/1yxm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yxm ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acyl-CoA_dehydrogenase_(NADP(+)) Acyl-CoA dehydrogenase (NADP(+))], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.1.8 1.3.1.8] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yxm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yxm OCA], [http://pdbe.org/1yxm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yxm RCSB], [http://www.ebi.ac.uk/pdbsum/1yxm PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/PECR_HUMAN PECR_HUMAN]] Participates in chain elongation of fatty acids. Has no 2,4-dienoyl-CoA reductase activity.
+[https://www.uniprot.org/uniprot/PECR_HUMAN PECR_HUMAN] Participates in chain elongation of fatty acids. Has no 2,4-dienoyl-CoA reductase activity.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/1yxm_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/1yxm_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yxm ConSurf].
 <div style="clear:both"></div>
 __TOC__
 </StructureSection>
-[[Category: Human]]
+[[Category: Homo sapiens]]
-[[Category: Arrowsmith, C]]
+[[Category: Large Structures]]
-[[Category: Delft, F Von]]
+[[Category: Arrowsmith C]]
-[[Category: Edwards, A M]]
+[[Category: Edwards AM]]
-[[Category: Jansson, A]]
+[[Category: Jansson A]]
-[[Category: Ng, S]]
+[[Category: Ng S]]
-[[Category: Oppermann, U]]
+[[Category: Oppermann U]]
-[[Category: Structural genomic]]
+[[Category: Sharma S]]
-[[Category: Sharma, S]]
+[[Category: Sundstrom M]]
-[[Category: Sundstrom, M]]
+[[Category: Von Delft F]]
-[[Category: Enoyl coa]]
-[[Category: Fatty acid synthesis]]
-[[Category: Oxidoreductase]]
-[[Category: Perioxisome]]
-[[Category: Sgc]]
-[[Category: Short-chain dehydrogenases/reductase]]