1wnf: Difference between revisions

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 ==Crystal Structure of PH0066 from Pyrococcus horikoshii==
-<StructureSection load='1wnf' size='340' side='right' caption='[[1wnf]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+<StructureSection load='1wnf' size='340' side='right'caption='[[1wnf]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1wnf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WNF FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1wnf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WNF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WNF FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PH0066 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 'Pyrococcus shinkaii'])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Asparaginase Asparaginase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.1 3.5.1.1] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wnf OCA], [https://pdbe.org/1wnf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wnf RCSB], [https://www.ebi.ac.uk/pdbsum/1wnf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wnf ProSAT], [https://www.topsan.org/Proteins/RSGI/1wnf TOPSAN]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wnf OCA], [http://pdbe.org/1wnf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wnf RCSB], [http://www.ebi.ac.uk/pdbsum/1wnf PDBsum], [http://www.topsan.org/Proteins/RSGI/1wnf TOPSAN]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/O57797_PYRHO O57797_PYRHO]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wn/1wnf_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wn/1wnf_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wnf ConSurf].
 <div style="clear:both"></div>
 ==See Also==
-*[[Asparaginase|Asparaginase]]
+*[[Asparaginase 3D structures|Asparaginase 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: Pyrococcus shinkaii]]
+[[Category: Large Structures]]
-[[Category: Asparaginase]]
+[[Category: Pyrococcus horikoshii]]
 [[Category: Ihsanawati]]
-[[Category: Murayama, K]]
+[[Category: Murayama K]]
-[[Category: Structural genomic]]
+[[Category: Sekine S]]
-[[Category: Sekine, S]]
+[[Category: Shirouzu M]]
-[[Category: Shirouzu, M]]
+[[Category: Sugawara M]]
-[[Category: Sugawara, M]]
+[[Category: Yokoyama S]]
-[[Category: Yokoyama, S]]
-[[Category: Alpha and beta protein]]
-[[Category: Hydrolase]]
-[[Category: Rsgi]]