1vdk: Difference between revisions

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[[Image:1vdk.jpg|left|200px]]


<!--
==Crystal structure of fumarase from thermus thermophilus HB8==
The line below this paragraph, containing "STRUCTURE_1vdk", creates the "Structure Box" on the page.
<StructureSection load='1vdk' size='340' side='right'caption='[[1vdk]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1vdk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VDK FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdk OCA], [https://pdbe.org/1vdk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vdk RCSB], [https://www.ebi.ac.uk/pdbsum/1vdk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vdk ProSAT], [https://www.topsan.org/Proteins/RSGI/1vdk TOPSAN]</span></td></tr>
{{STRUCTURE_1vdk|  PDB=1vdk |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/P84127_THETH P84127_THETH]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vdk_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vdk ConSurf].
<div style="clear:both"></div>


'''Crystal structure of fumarase from thermus thermophilus HB8'''
==See Also==
 
*[[Fumarase|Fumarase]]
 
__TOC__
==About this Structure==
</StructureSection>
1VDK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDK OCA].
[[Category: Large Structures]]
[[Category: Fumarate hydratase]]
[[Category: Thermus thermophilus HB8]]
[[Category: Single protein]]
[[Category: Kunishima N]]
[[Category: Thermus thermophilus]]
[[Category: Mizutani H]]
[[Category: Kunishima, N.]]
[[Category: Mizutani, H.]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Fumarase]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Rsgi]]
[[Category: Structural genomic]]
[[Category: Tca cycle]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 12:24:41 2008''

Latest revision as of 10:52, 25 October 2023

Crystal structure of fumarase from thermus thermophilus HB8Crystal structure of fumarase from thermus thermophilus HB8

Structural highlights

1vdk is a 2 chain structure with sequence from Thermus thermophilus HB8. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.8Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

P84127_THETH

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1vdk, resolution 1.80Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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