1vdk: Difference between revisions

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[[Image:1vdk.jpg|left|200px]]<br /><applet load="1vdk" size="350" color="white" frame="true" align="right" spinBox="true"
caption="1vdk, resolution 1.80&Aring;" />
'''Crystal structure of fumarase from thermus thermophilus HB8'''<br />


==About this Structure==
==Crystal structure of fumarase from thermus thermophilus HB8==
1VDK is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Active as [http://en.wikipedia.org/wiki/Fumarate_hydratase Fumarate hydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.2 4.2.1.2] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDK OCA].
<StructureSection load='1vdk' size='340' side='right'caption='[[1vdk]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
[[Category: Fumarate hydratase]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[1vdk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VDK FirstGlance]. <br>
[[Category: Thermus thermophilus]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
[[Category: Kunishima, N.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdk OCA], [https://pdbe.org/1vdk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vdk RCSB], [https://www.ebi.ac.uk/pdbsum/1vdk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vdk ProSAT], [https://www.topsan.org/Proteins/RSGI/1vdk TOPSAN]</span></td></tr>
[[Category: Mizutani, H.]]
</table>
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
== Function ==
[[Category: fumarase]]
[https://www.uniprot.org/uniprot/P84127_THETH P84127_THETH]  
[[Category: riken structural genomics/proteomics initiative]]
== Evolutionary Conservation ==
[[Category: rsgi]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: structural genomics]]
Check<jmol>
[[Category: tca cycle]]
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vdk_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vdk ConSurf].
<div style="clear:both"></div>


''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:34:08 2008''
==See Also==
*[[Fumarase|Fumarase]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermus thermophilus HB8]]
[[Category: Kunishima N]]
[[Category: Mizutani H]]

Latest revision as of 10:52, 25 October 2023

Crystal structure of fumarase from thermus thermophilus HB8Crystal structure of fumarase from thermus thermophilus HB8

Structural highlights

1vdk is a 2 chain structure with sequence from Thermus thermophilus HB8. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.8Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

P84127_THETH

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1vdk, resolution 1.80Å

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