1umj: Difference between revisions

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 ==Crystal structure of Pyrococcus horikoshii CutA in the presence of 3M guanidine hydrochloride==
-<StructureSection load='1umj' size='340' side='right' caption='[[1umj]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+<StructureSection load='1umj' size='340' side='right'caption='[[1umj]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1umj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii_ot3 Pyrococcus horikoshii ot3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UMJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UMJ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1umj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UMJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UMJ FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GAI:GUANIDINE'>GAI</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1j2v|1j2v]], [[1uku|1uku]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GAI:GUANIDINE'>GAI</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PH0992 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii OT3])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1umj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1umj OCA], [https://pdbe.org/1umj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1umj RCSB], [https://www.ebi.ac.uk/pdbsum/1umj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1umj ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1umj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1umj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1umj RCSB], [http://www.ebi.ac.uk/pdbsum/1umj PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/CUTA_PYRHO CUTA_PYRHO]] Involved in resistance toward heavy metals.
+[https://www.uniprot.org/uniprot/CUTA_PYRHO CUTA_PYRHO] Involved in resistance toward heavy metals.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/um/1umj_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/um/1umj_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1umj ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 28: / Line 28: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 1umj" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[CutA1|CutA1]]
+*[[CutA1 3D structures|CutA1 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Pyrococcus horikoshii ot3]]
+[[Category: Large Structures]]
-[[Category: Kumagai, I]]
+[[Category: Pyrococcus horikoshii OT3]]
-[[Category: Sakai, N]]
+[[Category: Kumagai I]]
-[[Category: Tanaka, I]]
+[[Category: Sakai N]]
-[[Category: Tanaka, Y]]
+[[Category: Tanaka I]]
-[[Category: Tsumoto, K]]
+[[Category: Tanaka Y]]
-[[Category: Yao, M]]
+[[Category: Tsumoto K]]
-[[Category: Yasutake, Y]]
+[[Category: Yao M]]
-[[Category: Copper tolerance]]
+[[Category: Yasutake Y]]
-[[Category: Cuta]]
-[[Category: Structural genomic]]
-[[Category: Unknown function]]