1sw0: Difference between revisions

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-{{Seed}}
-[[Image:1sw0.png|left|200px]]
-<!--
+==Triosephosphate isomerase from Gallus gallus, loop 6 hinge mutant K174L, T175W==
-The line below this paragraph, containing "STRUCTURE_1sw0", creates the "Structure Box" on the page.
+<StructureSection load='1sw0' size='340' side='right'caption='[[1sw0]], [[Resolution|resolution]] 1.71&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1sw0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SW0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SW0 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.71&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PGA:2-PHOSPHOGLYCOLIC+ACID'>PGA</scene></td></tr>
-{{STRUCTURE_1sw0|  PDB=1sw0  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sw0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sw0 OCA], [https://pdbe.org/1sw0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sw0 RCSB], [https://www.ebi.ac.uk/pdbsum/1sw0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sw0 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/TPIS_CHICK TPIS_CHICK]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sw/1sw0_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sw0 ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The conformational switch from open to closed of the flexible loop 6 of triosephosphate isomerase (TIM) is essential for the catalytic properties of TIM. Using a directed evolution approach, active variants of chicken TIM with a mutated C-terminal hinge tripeptide of loop 6 have been generated (Sun,J. and Sampson,N.S., Biochemistry, 1999, 38, 11474-11481). In chicken TIM, the wild-type C-terminal hinge tripeptide is KTA. Detailed enzymological characterization of six variants showed that some of these (LWA, NPN, YSL, KTK) have decreased catalytic efficiency, whereas others (KVA, NSS) are essentially identical with wild-type. The structural characterization of these six variants is reported. No significant structural differences compared with the wild-type are found for KVA, NSS and LWA, but substantial structural adaptations are seen for NPN, YSL and KTK. These structural differences can be understood from the buried position of the alanine side chain in the C-hinge position 3 in the open conformation of wild-type loop 6. Replacement of this alanine with a bulky side chain causes the closed conformation to be favored, which correlates with the decreased catalytic efficiency of these variants. The structural context of loop 6 and loop 7 and their sequence conservation in 133 wild-type sequences is also discussed.
-===Triosephosphate isomerase from Gallus gallus, loop 6 hinge mutant K174L, T175W===
+Understanding protein lids: structural analysis of active hinge mutants in triosephosphate isomerase.,Kursula I, Salin M, Sun J, Norledge BV, Haapalainen AM, Sampson NS, Wierenga RK Protein Eng Des Sel. 2004 Apr;17(4):375-82. Epub 2004 May 27. PMID:15166315<ref>PMID:15166315</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 1sw0" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_15166315}}, adds the Publication Abstract to the page
+*[[Triose phosphate isomerase 3D structures|Triose phosphate isomerase 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 15166315 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_15166315}}
+__TOC__
+</StructureSection>
-==About this Structure==
-SW0 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SW0 OCA].
-==Reference==
-<ref group="xtra">PMID:15166315</ref><references group="xtra"/>
 [[Category: Gallus gallus]]
-[[Category: Triose-phosphate isomerase]]
+[[Category: Large Structures]]
-[[Category: Haapalainen, A M.]]
+[[Category: Haapalainen AM]]
-[[Category: Kursula, I.]]
+[[Category: Kursula I]]
-[[Category: Norledge, B V.]]
+[[Category: Norledge BV]]
-[[Category: Salin, M.]]
+[[Category: Salin M]]
-[[Category: Sampson, N S.]]
+[[Category: Sampson NS]]
-[[Category: Sun, J.]]
+[[Category: Sun J]]
-[[Category: Wierenga, R K.]]
+[[Category: Wierenga RK]]
-[[Category: Flexible loop]]
-[[Category: Hinge]]
-[[Category: Tim barrel]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 06:00:24 2009''