1lm1: Difference between revisions

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OCA

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 ==Structural studies on the synchronization of catalytic centers in glutamate synthase: native enzyme==
-<StructureSection load='1lm1' size='340' side='right' caption='[[1lm1]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
+<StructureSection load='1lm1' size='340' side='right'caption='[[1lm1]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1lm1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aphanocapsa_sp._(strain_n-1) Aphanocapsa sp. (strain n-1)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LM1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LM1 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1lm1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803 Synechocystis sp. PCC 6803]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LM1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LM1 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1llw|1llw]], [[1llz|1llz]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutamate_synthase_(ferredoxin) Glutamate synthase (ferredoxin)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.7.1 1.4.7.1] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lm1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lm1 OCA], [https://pdbe.org/1lm1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lm1 RCSB], [https://www.ebi.ac.uk/pdbsum/1lm1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lm1 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1lm1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lm1 OCA], [http://pdbe.org/1lm1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1lm1 RCSB], [http://www.ebi.ac.uk/pdbsum/1lm1 PDBsum]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/GLTS_SYNY3 GLTS_SYNY3]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lm/1lm1_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lm/1lm1_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lm1 ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 27: / Line 29: @@
 </div>
 <div class="pdbe-citations 1lm1" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Glutamate synthase|Glutamate synthase]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Bossi, R T]]
+[[Category: Large Structures]]
-[[Category: Curti, B]]
+[[Category: Synechocystis sp. PCC 6803]]
-[[Category: Ferrari, D]]
+[[Category: Bossi RT]]
-[[Category: Florencio, F J]]
+[[Category: Curti B]]
-[[Category: Heuvel, R H.van Den]]
+[[Category: Ferrari D]]
-[[Category: Mattevi, A]]
+[[Category: Florencio FJ]]
-[[Category: Ravasio, S]]
+[[Category: Mattevi A]]
-[[Category: Vanoni, M A]]
+[[Category: Ravasio S]]
-[[Category: Amidotransferase]]
+[[Category: Vanoni MA]]
-[[Category: Channeling]]
+[[Category: Van Den Heuvel RH]]
-[[Category: Glutamate synthase]]
-[[Category: Oxidoreductase]]