5lew: Difference between revisions

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-'''Unreleased structure'''
-The entry 5lew is ON HOLD  until Paper Publication
+==DNA polymerase==
+<StructureSection load='5lew' size='340' side='right'caption='[[5lew]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[5lew]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LEW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LEW FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lew FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lew OCA], [https://pdbe.org/5lew PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lew RCSB], [https://www.ebi.ac.uk/pdbsum/5lew PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lew ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/DPO3A_MYCTU DPO3A_MYCTU] DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase (By similarity).
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+High-fidelity DNA replication depends on a proofreading 3'-5' exonuclease that is associated with the replicative DNA polymerase. The replicative DNA polymerase DnaE1 from the major pathogen Mycobacterium tuberculosis (Mtb) uses its intrinsic PHP-exonuclease that is distinct from the canonical DEDD exonucleases found in the Escherichia coli and eukaryotic replisomes. The mechanism of the PHP-exonuclease is not known. Here, we present the crystal structure of the Mtb DnaE1 polymerase. The PHP-exonuclease has a trinuclear zinc center, coordinated by nine conserved residues. Cryo-EM analysis reveals the entry path of the primer strand in the PHP-exonuclease active site. Furthermore, the PHP-exonuclease shows a striking similarity to E. coli endonuclease IV, which provides clues regarding the mechanism of action. Altogether, this work provides important insights into the PHP-exonuclease and reveals unique properties that make it an attractive target for novel anti-mycobacterial drugs.The polymerase and histidinol phosphatase (PHP) domain in the DNA polymerase DnaE1 is essential for mycobacterial high-fidelity DNA replication. Here, the authors determine the DnaE1 crystal structure, which reveals the PHP-exonuclease mechanism that can be exploited for antibiotic development.
-Authors: Banos-Mateos, S., Lang, U.F., Maslen, S.L., Skehel, J.M., Lamers, M.H.
+High-fidelity DNA replication in Mycobacterium tuberculosis relies on a trinuclear zinc center.,Banos-Mateos S, van Roon AM, Lang UF, Maslen SL, Skehel JM, Lamers MH Nat Commun. 2017 Oct 11;8(1):855. doi: 10.1038/s41467-017-00886-w. PMID:29021523<ref>PMID:29021523</ref>
-Description: DNA polymerase
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
-[[Category: Skehel, J.M]]
+<div class="pdbe-citations 5lew" style="background-color:#fffaf0;"></div>
-[[Category: Maslen, S.L]]
-[[Category: Banos-Mateos, S]]
+==See Also==
-[[Category: Lang, U.F]]
+*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
-[[Category: Lamers, M.H]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Mycobacterium tuberculosis H37Rv]]
+[[Category: Banos-Mateos S]]
+[[Category: Lamers MH]]
+[[Category: Lang UF]]
+[[Category: Maslen SL]]
+[[Category: Skehel JM]]