6dsx: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-'''Unreleased structure'''
-The entry 6dsx is ON HOLD
+==Bst DNA polymerase I post-chemistry (n+1 with dATP soak) structure==
+<StructureSection load='6dsx' size='340' side='right'caption='[[6dsx]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6dsx]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DSX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DSX FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dsx OCA], [https://pdbe.org/6dsx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dsx RCSB], [https://www.ebi.ac.uk/pdbsum/6dsx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dsx ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/E1C9K5_GEOSE E1C9K5_GEOSE]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+High resolution crystal structures of DNA polymerase intermediates are needed to study the mechanism of DNA synthesis in cells. Here we report five crystal structures of DNA polymerase I that capture new conformations for the polymerase translocation and nucleotide pre-insertion steps in the DNA synthesis pathway. We suggest that these new structures, along with previously solved structures, highlight the dynamic nature of the finger subdomain in the enzyme active site.
-Authors: Chim, N., Jackson, L.N., Chaput, J.C.
+Crystal structures of DNA polymerase I capture novel intermediates in the DNA synthesis pathway.,Chim N, Jackson LN, Trinh AM, Chaput JC Elife. 2018 Oct 19;7. pii: 40444. doi: 10.7554/eLife.40444. PMID:30338759<ref>PMID:30338759</ref>
-Description: Bst DNA polymerase I post-chemistry (n+1 with dATP soak) structure
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
-[[Category: Chaput, J.C]]
+<div class="pdbe-citations 6dsx" style="background-color:#fffaf0;"></div>
-[[Category: Jackson, L.N]]
-[[Category: Chim, N]]
+==See Also==
+*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Geobacillus stearothermophilus]]
+[[Category: Large Structures]]
+[[Category: Synthetic construct]]
+[[Category: Chaput JC]]
+[[Category: Chim N]]
+[[Category: Jackson LN]]