6dp7: Difference between revisions

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 ==Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 500 mM Mn2+ and 200 mM K+ for 40 s at 21 C==
-<StructureSection load='6dp7' size='340' side='right' caption='[[6dp7]], [[Resolution|resolution]] 1.38&Aring;' scene=''>
+<StructureSection load='6dp7' size='340' side='right'caption='[[6dp7]], [[Resolution|resolution]] 1.38&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6dp7]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DP7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DP7 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6dp7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkalihalobacillus_halodurans_C-125 Alkalihalobacillus halodurans C-125] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DP7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DP7 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.381&#8491;</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_H Ribonuclease H], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.26.4 3.1.26.4] </span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dp7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dp7 OCA], [http://pdbe.org/6dp7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dp7 RCSB], [http://www.ebi.ac.uk/pdbsum/6dp7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dp7 ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dp7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dp7 OCA], [https://pdbe.org/6dp7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dp7 RCSB], [https://www.ebi.ac.uk/pdbsum/6dp7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dp7 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/RNH1_BACHD RNH1_BACHD]] Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
+[https://www.uniprot.org/uniprot/RNH1_HALH5 RNH1_HALH5] Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.<ref>PMID:15989951</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
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 </div>
 <div class="pdbe-citations 6dp7" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Ribonuclease H]]
+[[Category: Alkalihalobacillus halodurans C-125]]
-[[Category: Samara, N L]]
+[[Category: Large Structures]]
-[[Category: Yang, W]]
+[[Category: Synthetic construct]]
-[[Category: Divalent cation]]
+[[Category: Samara NL]]
-[[Category: Double helix]]
+[[Category: Yang W]]
-[[Category: Hydrolase-dna-rna complex]]
-[[Category: In crystallo catalysis]]
-[[Category: Metal dependent catalysis]]
-[[Category: Monovalent cation]]
-[[Category: Protein-rna-dna complex]]
-[[Category: Rna hydrolysis]]