3awf: Difference between revisions
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==Crystal structure of Pten-like domain of Ci-VSP (236-576)== | ==Crystal structure of Pten-like domain of Ci-VSP (236-576)== | ||
<StructureSection load='3awf' size='340' side='right' caption='[[3awf]], [[Resolution|resolution]] 1.99Å' scene=''> | <StructureSection load='3awf' size='340' side='right'caption='[[3awf]], [[Resolution|resolution]] 1.99Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3awf]] is a 3 chain structure with sequence from [ | <table><tr><td colspan='2'>[[3awf]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Ciona_intestinalis Ciona intestinalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AWF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AWF FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
< | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3awf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3awf OCA], [https://pdbe.org/3awf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3awf RCSB], [https://www.ebi.ac.uk/pdbsum/3awf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3awf ProSAT]</span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/Q4W8A1_CIOIN Q4W8A1_CIOIN] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
<div class="pdbe-citations 3awf" style="background-color:#fffaf0;"></div> | |||
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Ciona intestinalis]] | [[Category: Ciona intestinalis]] | ||
[[Category: Matsuda | [[Category: Large Structures]] | ||
[[Category: Nakagawa | [[Category: Matsuda M]] | ||
[[Category: Okamura | [[Category: Nakagawa A]] | ||
[[Category: Sakata | [[Category: Okamura Y]] | ||
[[Category: Suzuki | [[Category: Sakata S]] | ||
[[Category: Takeshita | [[Category: Suzuki M]] | ||
[[Category: Yamashita | [[Category: Takeshita K]] | ||
[[Category: Yamashita E]] | |||
Latest revision as of 18:58, 4 October 2023
Crystal structure of Pten-like domain of Ci-VSP (236-576)Crystal structure of Pten-like domain of Ci-VSP (236-576)
Structural highlights
FunctionPublication Abstract from PubMedCiona intestinalis voltage-sensing phosphatase (Ci-VSP) has a transmembrane voltage sensor domain and a cytoplasmic region sharing similarity to the phosphatase and tensin homolog (PTEN). It dephosphorylates phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate upon membrane depolarization. The cytoplasmic region is composed of a phosphatase domain and a putative membrane interaction domain, C2. Here we determined the crystal structures of the Ci-VSP cytoplasmic region in three distinct constructs, wild-type (248-576), wild-type (236-576), and G365A mutant (248-576). The crystal structure of WT-236 and G365A-248 had the disulfide bond between the catalytic residue Cys-363 and the adjacent residue Cys-310. On the other hand, the disulfide bond was not present in the crystal structure of WT-248. These suggest the possibility that Ci-VSP is regulated by reactive oxygen species as found in PTEN. These structures also revealed that the conformation of the TI loop in the active site of the Ci-VSP cytoplasmic region was distinct from the corresponding region of PTEN; Ci-VSP has glutamic acid (Glu-411) in the TI loop, orienting toward the center of active site pocket. Mutation of Glu-411 led to acquirement of increased activity toward phosphatidylinositol 3,5-bisphosphate, suggesting that this site is required for determining substrate specificity. Our results provide the basic information of the enzymatic mechanism of Ci-VSP. Crystal structure of the cytoplasmic phosphatase and tensin homolog (PTEN)-like region of Ciona intestinalis voltage-sensing phosphatase provides insight into substrate specificity and redox regulation of the phosphoinositide phosphatase activity.,Matsuda M, Takeshita K, Kurokawa T, Sakata S, Suzuki M, Yamashita E, Okamura Y, Nakagawa A J Biol Chem. 2011 Jul 1;286(26):23368-77. Epub 2011 May 4. PMID:21543329[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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