3amr: Difference between revisions

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-[[Image:3amr.jpg|left|200px]]
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+==Crystal Structures of Bacillus subtilis Alkaline Phytase in Complex with Ca2+, Co2+, Ni2+, Mg2+ and myo-Inositol Hexasulfate==
-The line below this paragraph, containing "STRUCTURE_3amr", creates the "Structure Box" on the page.
+<StructureSection load='3amr' size='340' side='right'caption='[[3amr]], [[Resolution|resolution]] 1.25&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3amr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AMR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AMR FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.25&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=IHS:D-MYO-INOSITOL-HEXASULPHATE'>IHS</scene></td></tr>
-{{STRUCTURE_3amr|  PDB=3amr  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3amr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3amr OCA], [https://pdbe.org/3amr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3amr RCSB], [https://www.ebi.ac.uk/pdbsum/3amr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3amr ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PHYC_BACIU PHYC_BACIU] Catalyzes the hydrolysis of inorganic orthophosphate from phytate. Only phytate, ADP, and ATP were hydrolyzed (100, 75, and 50% of the relative activity, respectively).
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Alkaline phytases from Bacillus species, which hydrolyze phytate to less phosphorylated myo-inositols and inorganic phosphate, have great potential as additives to animal feed. The thermostability and neutral optimum pH of Bacillus phytase are attributed largely to the presence of calcium ions. Nonetheless, no report has demonstrated directly how the metal ions coordinate phytase and its substrate to facilitate the catalytic reaction. In this study, the interactions between a phytate analog (myo-inositol hexasulfate) and divalent metal ions in Bacillus subtilis phytase were revealed by the crystal structure at 1.25 A resolution. We found all, except the first, sulfates on the substrate analog have direct or indirect interactions with amino acid residues in the enzyme active site. The structures also unraveled two active site-associated metal ions that were not explored in earlier studies. Significantly, one metal ion could be crucial to substrate binding. In addition, binding of the fourth sulfate of the substrate analog to the active site appears to be stronger than that of the others. These results indicate that alkaline phytase starts by cleaving the fourth phosphate, instead of the third or the sixth that were proposed earlier. Our high-resolution, structural representation of Bacillus phytase in complex with a substrate analog and divalent metal ions provides new insight into the catalytic mechanism of alkaline phytases in general.
-===Crystal Structures of Bacillus subtilis Alkaline Phytase in Complex with Ca2+, Co2+, Ni2+, Mg2+ and myo-Inositol Hexasulfate===
+Crystal structures of Bacillus alkaline phytase in complex with divalent metal ions and inositol hexasulfate.,Zeng YF, Ko TP, Lai HL, Cheng YS, Wu TH, Ma Y, Chen CC, Yang CS, Cheng KJ, Huang CH, Guo RT, Liu JR J Mol Biol. 2011 Jun 3;409(2):214-24. Epub 2011 Apr 2. PMID:21463636<ref>PMID:21463636</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 3amr" style="background-color:#fffaf0;"></div>
-==About this Structure==
+==See Also==
-[[3amr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AMR OCA].
+*[[Phytase 3D structures|Phytase 3D structures]]
-[[Category: 3-phytase]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
 [[Category: Bacillus subtilis]]
-[[Category: Cheng, K J.]]
+[[Category: Large Structures]]
-[[Category: Cheng, Y S.]]
+[[Category: Cheng KJ]]
-[[Category: Guo, R T.]]
+[[Category: Cheng YS]]
-[[Category: Huang, C H.]]
+[[Category: Guo RT]]
-[[Category: Ko, T P.]]
+[[Category: Huang CH]]
-[[Category: Lai, H L.]]
+[[Category: Ko TP]]
-[[Category: Liu, J R.]]
+[[Category: Lai HL]]
-[[Category: Ma, Y.]]
+[[Category: Liu JR]]
-[[Category: Wu, T H.]]
+[[Category: Ma Y]]
-[[Category: Yang, C S.]]
+[[Category: Wu TH]]
-[[Category: Zeng, Y F.]]
+[[Category: Yang CS]]
+[[Category: Zeng YF]]