5vm9: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
 ==Human Argonaute3 bound to guide RNA==
-<StructureSection load='5vm9' size='340' side='right' caption='[[5vm9]], [[Resolution|resolution]] 3.28&Aring;' scene=''>
+<StructureSection load='5vm9' size='340' side='right'caption='[[5vm9]], [[Resolution|resolution]] 3.28&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5vm9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human] and [http://en.wikipedia.org/wiki/Insect_cell_expression_vector_ptie1 Insect cell expression vector ptie1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VM9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VM9 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5vm9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Insect_cell_expression_vector_pTIE1 Insect cell expression vector pTIE1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VM9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VM9 FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AGO3, EIF2C3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.28&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vm9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vm9 OCA], [http://pdbe.org/5vm9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vm9 RCSB], [http://www.ebi.ac.uk/pdbsum/5vm9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vm9 ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vm9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vm9 OCA], [https://pdbe.org/5vm9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vm9 RCSB], [https://www.ebi.ac.uk/pdbsum/5vm9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vm9 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/AGO3_HUMAN AGO3_HUMAN]] Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs. Proposed to be involved in stabilization of small RNA derivates (riRNA) derived from processed RNA polymerase III-transcribed Alu repeats containing a DR2 retinoic acid response element (RARE) in stem cells and in the subsequent riRNA-dependent degradation of a subset of RNA polymerase II-transcribed coding mRNAs by recruiting a mRNA decapping complex involving EDC4.[HAMAP-Rule:MF_03032]<ref>PMID:18771919</ref> <ref>PMID:23064648</ref>
+[https://www.uniprot.org/uniprot/AGO3_HUMAN AGO3_HUMAN] Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs. Proposed to be involved in stabilization of small RNA derivates (riRNA) derived from processed RNA polymerase III-transcribed Alu repeats containing a DR2 retinoic acid response element (RARE) in stem cells and in the subsequent riRNA-dependent degradation of a subset of RNA polymerase II-transcribed coding mRNAs by recruiting a mRNA decapping complex involving EDC4.[HAMAP-Rule:MF_03032]<ref>PMID:18771919</ref> <ref>PMID:23064648</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 18: / Line 18: @@
 </div>
 <div class="pdbe-citations 5vm9" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Argonaute 3D structures|Argonaute 3D structures]]
+*[[Eukaryotic initiation factor 3D structures|Eukaryotic initiation factor 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Human]]
+[[Category: Homo sapiens]]
-[[Category: Insect cell expression vector ptie1]]
+[[Category: Insect cell expression vector pTIE1]]
-[[Category: Nakanishi, K]]
+[[Category: Large Structures]]
-[[Category: Park, M S]]
+[[Category: Nakanishi K]]
-[[Category: Complex]]
+[[Category: Park MS]]
-[[Category: Hydrolase-rna complex]]
-[[Category: Protein]]
-[[Category: Rna binding protein-rna complex]]