5v6d: Difference between revisions

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<StructureSection load='5v6d' size='340' side='right'caption='[[5v6d]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
<StructureSection load='5v6d' size='340' side='right'caption='[[5v6d]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5v6d]] is a 16 chain structure with sequence from [http://en.wikipedia.org/wiki/Neig2 Neig2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V6D OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5V6D FirstGlance]. <br>
<table><tr><td colspan='2'>[[5v6d]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_gonorrhoeae_NCCP11945 Neisseria gonorrhoeae NCCP11945]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V6D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5V6D FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ndk, NGK_1320 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=521006 NEIG2])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5v6d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v6d OCA], [https://pdbe.org/5v6d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5v6d RCSB], [https://www.ebi.ac.uk/pdbsum/5v6d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5v6d ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5v6d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v6d OCA], [http://pdbe.org/5v6d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v6d RCSB], [http://www.ebi.ac.uk/pdbsum/5v6d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v6d ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/NDK_NEIG2 NDK_NEIG2]] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.  
[https://www.uniprot.org/uniprot/NDK_NEIG2 NDK_NEIG2] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.


==See Also==
==See Also==
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Neig2]]
[[Category: Neisseria gonorrhoeae NCCP11945]]
[[Category: Nucleoside-diphosphate kinase]]
[[Category: Structural genomic]]
[[Category: Nucleoside diphosphate kinase]]
[[Category: Ssgcid]]
[[Category: Transferase]]

Latest revision as of 16:42, 4 October 2023

Crystal structure of nucleoside diphosphate kinase from Neisseria gonorrhoeae in complex with citrateCrystal structure of nucleoside diphosphate kinase from Neisseria gonorrhoeae in complex with citrate

Structural highlights

5v6d is a 16 chain structure with sequence from Neisseria gonorrhoeae NCCP11945. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.85Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

NDK_NEIG2 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.

See Also

5v6d, resolution 1.85Å

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