5twt: Difference between revisions

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OCA

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 ==Characterization of class III peroxidase from switchgrass (Panicum virgatum)==
-<StructureSection load='5twt' size='340' side='right' caption='[[5twt]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
+<StructureSection load='5twt' size='340' side='right'caption='[[5twt]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5twt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Panvg Panvg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TWT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5TWT FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5twt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Panicum_virgatum Panicum virgatum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TWT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5TWT FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.296&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PviPRX9 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=38727 PANVG])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peroxidase Peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.7 1.11.1.7] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5twt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5twt OCA], [https://pdbe.org/5twt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5twt RCSB], [https://www.ebi.ac.uk/pdbsum/5twt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5twt ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5twt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5twt OCA], [http://pdbe.org/5twt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5twt RCSB], [http://www.ebi.ac.uk/pdbsum/5twt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5twt ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/A0A1S4NYF8_PANVG A0A1S4NYF8_PANVG] Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.[RuleBase:RU362060]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 22: / Line 23: @@
 __TOC__
 </StructureSection>
-[[Category: Panvg]]
+[[Category: Large Structures]]
-[[Category: Peroxidase]]
+[[Category: Panicum virgatum]]
-[[Category: Kang, C]]
+[[Category: Kang C]]
-[[Category: Moural, T W]]
+[[Category: Moural TW]]
-[[Category: Class iii]]
-[[Category: Heme]]
-[[Category: Oxidoreductase]]