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==Crystal structure of a peptide deformylase from Burkholderia xenovorans== | ==Crystal structure of a peptide deformylase from Burkholderia xenovorans== | ||
<StructureSection load='5kob' size='340' side='right' caption='[[5kob]], [[Resolution|resolution]] 1.60Å' scene=''> | <StructureSection load='5kob' size='340' side='right'caption='[[5kob]], [[Resolution|resolution]] 1.60Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5kob]] is a 4 chain structure with sequence from [ | <table><tr><td colspan='2'>[[5kob]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Paraburkholderia_xenovorans_LB400 Paraburkholderia xenovorans LB400]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KOB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KOB FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr> | ||
< | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5kob FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kob OCA], [https://pdbe.org/5kob PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5kob RCSB], [https://www.ebi.ac.uk/pdbsum/5kob PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5kob ProSAT]</span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/Q13XB1_PARXL Q13XB1_PARXL] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: | [[Category: Paraburkholderia xenovorans LB400]] | ||
[[Category: SSGCID]] | [[Category: SSGCID]] | ||
Latest revision as of 13:49, 27 September 2023
Crystal structure of a peptide deformylase from Burkholderia xenovoransCrystal structure of a peptide deformylase from Burkholderia xenovorans
Structural highlights
FunctionQ13XB1_PARXL Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163] |
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