5kj7: Difference between revisions

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 ==Structure of the Ca2+-bound synaptotagmin-1 SNARE complex (long unit cell form) - from XFEL diffraction==
-<StructureSection load='5kj7' size='340' side='right' caption='[[5kj7]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
+<StructureSection load='5kj7' size='340' side='right'caption='[[5kj7]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5kj7]] is a 11 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KJ7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KJ7 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5kj7]] is a 11 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KJ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KJ7 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5kj8|5kj8]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Vamp3, Syb3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat]), Stx1a, Sap ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat]), Snap25, Snap ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat]), Syt1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5kj7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kj7 OCA], [https://pdbe.org/5kj7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5kj7 RCSB], [https://www.ebi.ac.uk/pdbsum/5kj7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5kj7 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kj7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kj7 OCA], [http://pdbe.org/5kj7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kj7 RCSB], [http://www.ebi.ac.uk/pdbsum/5kj7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kj7 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/SNP25_RAT SNP25_RAT]] t-SNARE involved in the molecular regulation of neurotransmitter release. May play an important role in the synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane fusion. Regulates plasma membrane recycling through its interaction with CENPF. [[http://www.uniprot.org/uniprot/VAMP3_RAT VAMP3_RAT]] SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network. [[http://www.uniprot.org/uniprot/STX1A_RAT STX1A_RAT]] Potentially involved in docking of synaptic vesicles at presynaptic active zones. May play a critical role in neurotransmitter exocytosis. May mediate Ca(2+)-regulation of exocytosis acrosomal reaction in sperm. [[http://www.uniprot.org/uniprot/SYT1_RAT SYT1_RAT]] May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. A Ca(2+)-dependent interaction between synaptotagmin and putative receptors for activated protein kinase C has also been reported. It can bind to at least three additional proteins in a Ca(2+)-independent manner; these are neurexins, syntaxin and AP2.
+[https://www.uniprot.org/uniprot/VAMP3_RAT VAMP3_RAT] SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 20: / Line 19: @@
 </div>
 <div class="pdbe-citations 5kj7" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Synaptosomal-associated protein|Synaptosomal-associated protein]]
+*[[Synaptotagmin 3D structures|Synaptotagmin 3D structures]]
+*[[Syntaxin 3D structures|Syntaxin 3D structures]]
+*[[Vesicle-associated membrane protein|Vesicle-associated membrane protein]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Buffalo rat]]
+[[Category: Large Structures]]
-[[Category: Brewster, A S]]
+[[Category: Rattus norvegicus]]
-[[Category: Brunger, A T]]
+[[Category: Brewster AS]]
-[[Category: Lyubimov, A Y]]
+[[Category: Brunger AT]]
-[[Category: Sauter, N K]]
+[[Category: Lyubimov AY]]
-[[Category: Uervirojnangkoorn, M]]
+[[Category: Sauter NK]]
-[[Category: Weis, W I]]
+[[Category: Uervirojnangkoorn M]]
-[[Category: Zhao, M]]
+[[Category: Weis WI]]
-[[Category: Zhou, Q]]
+[[Category: Zhao M]]
-[[Category: Endocytosis]]
+[[Category: Zhou Q]]
-[[Category: Exocytosis]]
-[[Category: Neuronal snare complex]]
-[[Category: Synaptic fusion complex]]
-[[Category: Synaptotagmin1]]
-[[Category: Xfel structure]]