5cl6: Difference between revisions

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 ==Alkylpurine DNA glycosylase AlkD bound to DNA containing a 3-methyladenine analog or DNA containing an abasic site and a free nucleobase (33% substrate/67% product at 72 hours)==
-<StructureSection load='5cl6' size='340' side='right' caption='[[5cl6]], [[Resolution|resolution]] 1.54&Aring;' scene=''>
+<StructureSection load='5cl6' size='340' side='right'caption='[[5cl6]], [[Resolution|resolution]] 1.54&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5cl6]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CL6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CL6 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5cl6]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CL6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CL6 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=54K:7-METHYL-3H-IMIDAZO[4,5-C]PYRIDIN-4-AMINE'>54K</scene>, <scene name='pdbligand=ORP:2-DEOXY-5-PHOSPHONO-RIBOSE'>ORP</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.541&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DZM:3-DEAZA-3-METHYLADENINE'>DZM</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=54K:7-METHYL-3H-IMIDAZO[4,5-C]PYRIDIN-4-AMINE'>54K</scene>, <scene name='pdbligand=DZM:3-DEAZA-3-METHYLADENINE'>DZM</scene>, <scene name='pdbligand=ORP:2-DEOXY-5-PHOSPHONO-RIBOSE'>ORP</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5cl3|5cl3]], [[5cl4|5cl4]], [[5cl5|5cl5]], [[5cl7|5cl7]], [[5cl8|5cl8]], [[5cl9|5cl9]], [[5cla|5cla]], [[5clb|5clb]], [[5clc|5clc]], [[5cld|5cld]], [[5cle|5cle]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cl6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cl6 OCA], [https://pdbe.org/5cl6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cl6 RCSB], [https://www.ebi.ac.uk/pdbsum/5cl6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cl6 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cl6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cl6 OCA], [http://pdbe.org/5cl6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cl6 RCSB], [http://www.ebi.ac.uk/pdbsum/5cl6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5cl6 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q816E8_BACCR Q816E8_BACCR]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 18: / Line 19: @@
 </div>
 <div class="pdbe-citations 5cl6" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[DNA glycosylase 3D structures|DNA glycosylase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Eichman, B F]]
+[[Category: Bacillus cereus]]
-[[Category: Mullins, E A]]
+[[Category: Large Structures]]
-[[Category: Dna glycosylase]]
+[[Category: Synthetic construct]]
-[[Category: Heat-like repeat]]
+[[Category: Eichman BF]]
-[[Category: Hydrolase-dna complex]]
+[[Category: Mullins EA]]
-[[Category: Protein-dna complex]]