4yfx: Difference between revisions

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-{{Large structure}}
 ==Escherichia coli RNA polymerase in complex with Myxopyronin B==
-<StructureSection load='4yfx' size='340' side='right' caption='[[4yfx]], [[Resolution|resolution]] 3.84&Aring;' scene=''>
+<StructureSection load='4yfx' size='340' side='right'caption='[[4yfx]], [[Resolution|resolution]] 3.84&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4yfx]] is a 12 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YFX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YFX FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4yfx]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12] and [https://en.wikipedia.org/wiki/Escherichia_coli_O139:H28_str._E24377A Escherichia coli O139:H28 str. E24377A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YFX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YFX FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4C4:MYXOPYRONIN+B'>4C4</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.844&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4yfk|4yfk]], [[4yfn|4yfn]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4C4:MYXOPYRONIN+B'>4C4</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_RNA_polymerase DNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.6 2.7.7.6] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yfx OCA], [https://pdbe.org/4yfx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yfx RCSB], [https://www.ebi.ac.uk/pdbsum/4yfx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yfx ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yfx OCA], [http://pdbe.org/4yfx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yfx RCSB], [http://www.ebi.ac.uk/pdbsum/4yfx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yfx ProSAT]</span></td></tr>
 </table>
-{{Large structure}}
 == Function ==
-[[http://www.uniprot.org/uniprot/RPOZ_ECO24 RPOZ_ECO24]] Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. [[http://www.uniprot.org/uniprot/RPOA_ECO24 RPOA_ECO24]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOC_ECO24 RPOC_ECO24]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOB_ECO24 RPOB_ECO24]] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. [[http://www.uniprot.org/uniprot/RPOD_ECOLI RPOD_ECOLI]] Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This is the primary sigma factor of this bacterium.
+[https://www.uniprot.org/uniprot/RPOA_ECO24 RPOA_ECO24] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 23: / Line 21: @@
 ==See Also==
-*[[Sigma factor|Sigma factor]]
+*[[RNA polymerase 3D structures|RNA polymerase 3D structures]]
+*[[Sigma factor 3D structures|Sigma factor 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: DNA-directed RNA polymerase]]
+[[Category: Escherichia coli K-12]]
-[[Category: Buurman, E T]]
+[[Category: Escherichia coli O139:H28 str. E24377A]]
-[[Category: Eyermann, C J]]
+[[Category: Large Structures]]
-[[Category: Ferguson, A D]]
+[[Category: Buurman ET]]
-[[Category: Fleming, P R]]
+[[Category: Eyermann CJ]]
-[[Category: Foulk, M A]]
+[[Category: Ferguson AD]]
-[[Category: Masse, C E]]
+[[Category: Fleming PR]]
-[[Category: McKinney, D C]]
+[[Category: Foulk MA]]
-[[Category: Molodtsov, V]]
+[[Category: Masse CE]]
-[[Category: Murakami, K S]]
+[[Category: McKinney DC]]
-[[Category: Squaramide]]
+[[Category: Molodtsov V]]
-[[Category: Switch region]]
+[[Category: Murakami KS]]
-[[Category: Transcription-transcription inhibitor complex]]