4yaz: Difference between revisions

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 ==3',3'-cGAMP riboswitch bound with 3',3'-cGAMP==
-<StructureSection load='4yaz' size='340' side='right' caption='[[4yaz]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+<StructureSection load='4yaz' size='340' side='right'caption='[[4yaz]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4yaz]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YAZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YAZ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4yaz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacter Geobacter]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YAZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YAZ FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4BW:2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d 3,2-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one'>4BW</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4BW:2-AMINO-9-[(2R,3R,3AS,5R,7AR,9R,10R,10AS,12R,14AR)-9-(6-AMINO-9H-PURIN-9-YL)-3,5,10,12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3,2-D 3,2-J][1,3,7,9,2,8]TETRAOXADIPHOSPHACYCLODODECIN-2-YL]-1,9-DIHYDRO-6H-PURIN-6-ONE'>4BW</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4yb0|4yb0]], [[4yb1|4yb1]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yaz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yaz OCA], [https://pdbe.org/4yaz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yaz RCSB], [https://www.ebi.ac.uk/pdbsum/4yaz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yaz ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yaz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yaz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4yaz RCSB], [http://www.ebi.ac.uk/pdbsum/4yaz PDBsum]</span></td></tr>
 </table>
 <div style="background-color:#fffaf0;">
@@ Line 16: / Line 16: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 4yaz" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Riboswitch 3D structures|Riboswitch 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Patel, D J]]
+[[Category: Geobacter]]
-[[Category: Rajashankar, R K]]
+[[Category: Large Structures]]
-[[Category: Ren, A M]]
+[[Category: Patel DJ]]
-[[Category: 3s']]
+[[Category: Rajashankar RK]]
-[[Category: 3'-cgamp]]
+[[Category: Ren AM]]
-[[Category: C-di-gmp]]
-[[Category: Riboswitch]]
-[[Category: Rna]]
-[[Category: Rna structure]]
-[[Category: Spinach]]