4y5r: Difference between revisions

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 ==Crystal Structure of a T67A MauG/pre-Methylamine Dehydrogenase Complex==
-<StructureSection load='4y5r' size='340' side='right' caption='[[4y5r]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
+<StructureSection load='4y5r' size='340' side='right'caption='[[4y5r]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4y5r]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Y5R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Y5R FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4y5r]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans] and [https://en.wikipedia.org/wiki/Paracoccus_denitrificans_PD1222 Paracoccus denitrificans PD1222]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Y5R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Y5R FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=0AF:7-HYDROXY-L-TRYPTOPHAN'>0AF</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0AF:7-HYDROXY-L-TRYPTOPHAN'>0AF</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3l4m|3l4m]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4y5r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4y5r OCA], [https://pdbe.org/4y5r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4y5r RCSB], [https://www.ebi.ac.uk/pdbsum/4y5r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4y5r ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methylamine_dehydrogenase_(amicyanin) Methylamine dehydrogenase (amicyanin)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.9.1 1.4.9.1] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4y5r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4y5r OCA], [http://pdbe.org/4y5r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4y5r RCSB], [http://www.ebi.ac.uk/pdbsum/4y5r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4y5r ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/MAUG_PARDP MAUG_PARDP]] Involved in methylamine metabolism. Essential for the maturation of the beta subunit of MADH, presumably via a step in the biosynthesis of tryptophan tryptophylquinone (TTQ), the cofactor of MADH. [[http://www.uniprot.org/uniprot/DHML_PARDE DHML_PARDE]] Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin.
+[https://www.uniprot.org/uniprot/MAUG_PARDP MAUG_PARDP] Involved in methylamine metabolism. Essential for the maturation of the beta subunit of MADH, presumably via a step in the biosynthesis of tryptophan tryptophylquinone (TTQ), the cofactor of MADH.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 23: / Line 21: @@
 ==See Also==
+*[[Methylamine dehydrogenase|Methylamine dehydrogenase]]
+*[[Methylamine utilisation protein|Methylamine utilisation protein]]
 *[[Methylation utilization protein MauG|Methylation utilization protein MauG]]
 == References ==
@@ Line 28: / Line 28: @@
 __TOC__
 </StructureSection>
-[[Category: Li, C]]
+[[Category: Large Structures]]
-[[Category: Wilmot, C M]]
+[[Category: Paracoccus denitrificans]]
-[[Category: Electron transfer]]
+[[Category: Paracoccus denitrificans PD1222]]
-[[Category: Heme]]
+[[Category: Li C]]
-[[Category: Maug]]
+[[Category: Wilmot CM]]
-[[Category: Oxidoreductase]]