4oaw: Difference between revisions

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-{{STRUCTURE_4oaw|  PDB=4oaw  |  SCENE=  }}
-===Fab structure of anti-HIV gp120 V2 mAb 2158===
-{{ABSTRACT_PUBMED_24478429}}
-==About this Structure==
+==Fab structure of anti-HIV gp120 V2 mAb 2158==
-[[4oaw]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OAW OCA].
+<StructureSection load='4oaw' size='340' side='right'caption='[[4oaw]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4oaw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OAW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4OAW FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4oaw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4oaw OCA], [https://pdbe.org/4oaw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4oaw RCSB], [https://www.ebi.ac.uk/pdbsum/4oaw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4oaw ProSAT]</span></td></tr>
+</table>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The RV144 HIV vaccine trial indicated that gp120 V2 antibodies were associated with lower risk of infection, thus the mapping of V2 epitopes can contribute to the design of an effective HIV vaccine. We solved the crystal structure of human monoclonal antibody (mAb) 2158 that targets a conformational V2 epitope overlapping the alpha4beta7 integrin binding site, and constructed a full-length model of V1V2. Comparison of computational energy stability to experimental ELISA results identified a hydrophobic core, stabilizing the V2 region for optimal 2158 binding, and residues that directly mediate side-chain interactions with mAb 2158. These data define the binding surface recognized by mAb 2158 and offer a structural explanation for why a mismatching mutation at position 181 (I181X) in the V2 loop is associated with a vaccine efficiency of 78% in the RV144 clinical vaccine trial.IMPORTANCE Correlates analysis of the RV144 HIV-1 vaccine trial suggested that the presence of antibodies to the second variable region (V2) of HIV-1 gp120 was responsible for the modest protection observed in the trial. V2 is a highly variable and immunogenic region and structural information for its antigenic landscape will be important for a rational design of an effective HIV-1 vaccine. Using X-ray crystallography, computational design tools, and mutagenesis assays, we have carried out a detailed and systematic investigation of the epitope recognition of human V2 mAb 2158 and demonstrated that its epitope region overlaps the integrin binding site within V2. In addition, we proposed a structural based mechanism for mismatching of isoleucine at position 181 with increased vaccine efficacy seen in the RV144 vaccine trial.
-==Reference==
+Functional Implications of the Binding Mode of a Human Conformation-dependent V2 Monoclonal Antibody against HIV.,Spurrier B, Sampson J, Gorny MK, Zolla-Pazner S, Kong XP J Virol. 2014 Jan 29. PMID:24478429<ref>PMID:24478429</ref>
-<ref group="xtra">PMID:024478429</ref><references group="xtra"/><references/>
-[[Category: Kong, X P.]]
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Spurrier, B R.]]
+</div>
-[[Category: Antibody]]
+<div class="pdbe-citations 4oaw" style="background-color:#fffaf0;"></div>
-[[Category: Hiv-1 gp120]]
-[[Category: Ig]]
+==See Also==
-[[Category: Immune system]]
+*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Homo sapiens]]
+[[Category: Large Structures]]
+[[Category: Kong XP]]
+[[Category: Spurrier BR]]