4lr6: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{STRUCTURE_4lr6|  PDB=4lr6  |  SCENE=  }}
-===Structure of BRD4 bromodomain 1 with a 3-methyl-4-phenylisoxazol-5-amine fragment===
-==Disease==
+==Structure of BRD4 bromodomain 1 with a 3-methyl-4-phenylisoxazol-5-amine fragment==
-[[http://www.uniprot.org/uniprot/BRD4_HUMAN BRD4_HUMAN]] Note=A chromosomal aberration involving BRD4 is found in a rare, aggressive, and lethal carcinoma arising in midline organs of young people. Translocation t(15;19)(q14;p13) with NUT which produces a BRD4-NUT fusion protein.<ref>PMID:12543779</ref> <ref>PMID:11733348</ref>
+<StructureSection load='4lr6' size='340' side='right'caption='[[4lr6]], [[Resolution|resolution]] 1.29&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4lr6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LR6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4LR6 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.29&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1XA:3-METHYL-4-PHENYL-1,2-OXAZOL-5-AMINE'>1XA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4lr6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lr6 OCA], [https://pdbe.org/4lr6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4lr6 RCSB], [https://www.ebi.ac.uk/pdbsum/4lr6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4lr6 ProSAT]</span></td></tr>
+</table>
+== Disease ==
+[https://www.uniprot.org/uniprot/BRD4_HUMAN BRD4_HUMAN] Note=A chromosomal aberration involving BRD4 is found in a rare, aggressive, and lethal carcinoma arising in midline organs of young people. Translocation t(15;19)(q14;p13) with NUT which produces a BRD4-NUT fusion protein.<ref>PMID:12543779</ref> <ref>PMID:11733348</ref>
+== Function ==
+[https://www.uniprot.org/uniprot/BRD4_HUMAN BRD4_HUMAN] Plays a role in a process governing chromosomal dynamics during mitosis (By similarity).
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The identification of a novel series of small molecule BET inhibitors is described. Using crystallographic binding modes of an amino-isoxazole fragment and known BET inhibitors, a structure-based drug design effort lead to a novel isoxazole azepine scaffold. This scaffold showed good potency in biochemical and cellular assays and oral activity in an in vivo model of BET inhibition.
-==Function==
+Discovery, Design, and Optimization of Isoxazole Azepine BET Inhibitors.,Gehling VS, Hewitt MC, Vaswani RG, Leblanc Y, Cote A, Nasveschuk CG, Taylor AM, Harmange JC, Audia JE, Pardo E, Joshi S, Sandy P, Mertz JA, Sims RJ 3rd, Bergeron L, Bryant BM, Bellon S, Poy F, Jayaram H, Sankaranarayanan R, Yellapantula S, Bangalore Srinivasamurthy N, Birudukota S, Albrecht BK ACS Med Chem Lett. 2013 Jul 16;4(9):835-40. doi: 10.1021/ml4001485. eCollection, 2013 Sep 12. PMID:24900758<ref>PMID:24900758</ref>
-[[http://www.uniprot.org/uniprot/BRD4_HUMAN BRD4_HUMAN]] Plays a role in a process governing chromosomal dynamics during mitosis (By similarity).
-==About this Structure==
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[4lr6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LR6 OCA].
+</div>
+<div class="pdbe-citations 4lr6" style="background-color:#fffaf0;"></div>
-==Reference==
+==See Also==
-<references group="xtra"/><references/>
+*[[Bromodomain-containing protein 3D structures|Bromodomain-containing protein 3D structures]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
 [[Category: Homo sapiens]]
-[[Category: Albrecht, B.]]
+[[Category: Large Structures]]
-[[Category: Audia, J.]]
+[[Category: Albrecht B]]
-[[Category: Bellon, S.]]
+[[Category: Audia J]]
-[[Category: Bergeron, L.]]
+[[Category: Bellon S]]
-[[Category: Birudukota, S.]]
+[[Category: Bergeron L]]
-[[Category: Bryant, B.]]
+[[Category: Birudukota S]]
-[[Category: Cote, A.]]
+[[Category: Bryant B]]
-[[Category: Gehling, V.]]
+[[Category: Cote A]]
-[[Category: Harmange, J C.]]
+[[Category: Gehling V]]
-[[Category: Hewitt, M.]]
+[[Category: Harmange J-C]]
-[[Category: Jayaram, H.]]
+[[Category: Hewitt M]]
-[[Category: Joshi, S.]]
+[[Category: Jayaram H]]
-[[Category: Leblanc, Y.]]
+[[Category: Joshi S]]
-[[Category: Mertz, J.]]
+[[Category: Leblanc Y]]
-[[Category: Nandana, B S.]]
+[[Category: Mertz J]]
-[[Category: Nasveschuk, C.]]
+[[Category: Nandana BS]]
-[[Category: Pardo, E.]]
+[[Category: Nasveschuk C]]
-[[Category: Poy, F.]]
+[[Category: Pardo E]]
-[[Category: Sandy, P.]]
+[[Category: Poy F]]
-[[Category: Sankaranarayanan, R.]]
+[[Category: Ravichandran S]]
-[[Category: Sims, R.]]
+[[Category: Sandy P]]
-[[Category: Taylor, A.]]
+[[Category: Sims R]]
-[[Category: Vaswani, R.]]
+[[Category: Taylor A]]
-[[Category: Yellapuntala, S.]]
+[[Category: Vaswani R]]
-[[Category: Bet inhibitor]]
+[[Category: Yellapuntala S]]
-[[Category: Brd4 first bromodomain]]
-[[Category: Transcription regulator-inhibitor complex]]