4ki8: Difference between revisions

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-{{STRUCTURE_4ki8|  PDB=4ki8  |  SCENE=  }}
-===Crystal structure of a GroEL-ADP complex in the relaxed allosteric state===
-{{ABSTRACT_PUBMED_23861496}}
-==Function==
+==Crystal structure of a GroEL-ADP complex in the relaxed allosteric state==
-[[http://www.uniprot.org/uniprot/Q548M1_ECOLX Q548M1_ECOLX]] Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions (By similarity).[RuleBase:RU000419][HAMAP-Rule:MF_00600]
+<StructureSection load='4ki8' size='340' side='right'caption='[[4ki8]], [[Resolution|resolution]] 2.72&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4ki8]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KI8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4KI8 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.722&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ki8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ki8 OCA], [https://pdbe.org/4ki8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ki8 RCSB], [https://www.ebi.ac.uk/pdbsum/4ki8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ki8 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q548M1_ECOLX Q548M1_ECOLX] Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions (By similarity).[RuleBase:RU000419][HAMAP-Rule:MF_00600]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The chaperonin proteins GroEL and GroES are cellular nanomachines driven by the hydrolysis of ATP that facilitate the folding of structurally diverse substrate proteins. In response to ligand binding, the subunits of a ring cycle in a concerted manner through a series of allosteric states (T, R, and R''), enabling work to be performed on the substrate protein. Removing two salt bridges that ordinarily break during the allosteric transitions of the WT permitted the structure of GroEL-ADP in the R state to be solved to 2.7 A resolution. Whereas the equatorial domain displays almost perfect sevenfold symmetry, the apical domains, to which substrate proteins bind, and to a lesser extent, the intermediate domains display a remarkable asymmetry. Freed of intersubunit contacts, the apical domain of each subunit adopts a different conformation, suggesting a flexibility that permits interaction with diverse substrate proteins. This result contrasts with a previous cryo-EM study of a related allosteric ATP-bound state at lower resolution. After artificially imposing sevenfold symmetry it was concluded that a GroEL ring in the R-ATP state existed in six homogeneous but slightly different states. By imposing sevenfold symmetry on each of the subunits of the crystal structure of GroEL-ADP, we showed that the synthetic rings of (X-ray) GroEL-ADP and (cryo-EM) GroEL-ATP are structurally closely related. A deterministic model, the click stop mechanism, that implied temporal transitions between these states was proposed. Here, however, these conformational states are shown to exist as a structurally heterogeneous ensemble within a single ring.
-==About this Structure==
+Crystal structure of a GroEL-ADP complex in the relaxed allosteric state at 2.7 A resolution.,Fei X, Yang D, Laronde-Leblanc N, Lorimer GH Proc Natl Acad Sci U S A. 2013 Jul 16. PMID:23861496<ref>PMID:23861496</ref>
-[[4ki8]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KI8 OCA].
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 4ki8" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[Chaperonin|Chaperonin]]
+*[[Chaperonin 3D structures|Chaperonin 3D structures]]
+== References ==
-==Reference==
+<references/>
-<ref group="xtra">PMID:023861496</ref><references group="xtra"/><references/>
+__TOC__
+</StructureSection>
 [[Category: Escherichia coli]]
-[[Category: Fei, X.]]
+[[Category: Large Structures]]
-[[Category: LaRonde-LeBlanc, N.]]
+[[Category: Fei X]]
-[[Category: Lorimer, G H.]]
+[[Category: LaRonde-LeBlanc N]]
-[[Category: Yang, D.]]
+[[Category: Lorimer GH]]
-[[Category: Asymmetrical]]
+[[Category: Yang D]]
-[[Category: Atp/adp binding]]
-[[Category: Atpase]]
-[[Category: Chaperone]]
-[[Category: Chaperonin]]
-[[Category: Groes binding]]
-[[Category: Homoligomer]]
-[[Category: Misfolded protein binding]]
-[[Category: Relaxed allosteric state]]
-[[Category: Tetradecamer]]