4h3c: Difference between revisions

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 ==Structure of E. coli undecaprenyl diphosphate synthase in complex with BPH-987==
-<StructureSection load='4h3c' size='340' side='right' caption='[[4h3c]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
+<StructureSection load='4h3c' size='340' side='right'caption='[[4h3c]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4h3c]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H3C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4H3C FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4h3c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H3C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4H3C FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0YZ:(2Z)-4-[3-(DECYLOXY)PHENYL]-2-HYDROXY-4-OXOBUT-2-ENOIC+ACID'>0YZ</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.93&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4h2j|4h2j]], [[4h2m|4h2m]], [[4h2o|4h2o]], [[4h38|4h38]], [[4h3a|4h3a]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0YZ:(2Z)-4-[3-(DECYLOXY)PHENYL]-2-HYDROXY-4-OXOBUT-2-ENOIC+ACID'>0YZ</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">uppS, ispU, rth, yaeS, b0174, JW0169 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4h3c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h3c OCA], [https://pdbe.org/4h3c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4h3c RCSB], [https://www.ebi.ac.uk/pdbsum/4h3c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4h3c ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Di-trans,poly-cis-decaprenylcistransferase Di-trans,poly-cis-decaprenylcistransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.31 2.5.1.31] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4h3c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h3c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4h3c RCSB], [http://www.ebi.ac.uk/pdbsum/4h3c PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/UPPS_ECOLI UPPS_ECOLI]] Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate (FPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.<ref>PMID:12756244</ref>
+[https://www.uniprot.org/uniprot/UPPS_ECOLI UPPS_ECOLI] Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate (FPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.<ref>PMID:12756244</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 19: / Line 18: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 4h3c" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[Farnesyl diphosphate synthase|Farnesyl diphosphate synthase]]
+*[[Farnesyl diphosphate synthase 3D structures|Farnesyl diphosphate synthase 3D structures]]
 *[[Undecaprenyl pyrophosphate synthase|Undecaprenyl pyrophosphate synthase]]
 == References ==
@@ Line 27: / Line 27: @@
 __TOC__
 </StructureSection>
-[[Category: Di-trans,poly-cis-decaprenylcistransferase]]
 [[Category: Escherichia coli]]
-[[Category: Oldfield, E]]
+[[Category: Large Structures]]
-[[Category: Zhu, W]]
+[[Category: Oldfield E]]
-[[Category: Alpha-helix]]
+[[Category: Zhu W]]
-[[Category: Cell wall biosynthesis]]
-[[Category: Farnesyl diphosphate binding]]
-[[Category: Isopentenyl diphosphate binding]]
-[[Category: Prenyl transferase]]
-[[Category: Prenyl transferase inhibitor complex]]
-[[Category: Transferase-transferase inhibitor complex]]