2amu: Difference between revisions

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-[[Image:2amu.gif|left|200px]]
-<!--
+==CRYSTAL STRUCTURE OF A PUTATIVE SUPEROXIDE REDUCTASE (TM0658) FROM THERMOTOGA MARITIMA AT 2.00 A RESOLUTION==
-The line below this paragraph, containing "STRUCTURE_2amu", creates the "Structure Box" on the page.
+<StructureSection load='2amu' size='340' side='right'caption='[[2amu]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2amu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AMU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AMU FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-{{STRUCTURE_2amu|  PDB=2amu  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2amu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2amu OCA], [https://pdbe.org/2amu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2amu RCSB], [https://www.ebi.ac.uk/pdbsum/2amu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2amu ProSAT], [https://www.topsan.org/Proteins/JCSG/2amu TOPSAN]</span></td></tr>
+</table>
-'''Crystal structure of Putative superoxide reductase (EC 1.15.1.2) (SOR) (tm0658) from THERMOTOGA MARITIMA at 2.00 A resolution'''
+== Function ==
+[https://www.uniprot.org/uniprot/SOR_THEMA SOR_THEMA] Uses electrons from reduced NADP, by way of rubredoxin and an oxidoreductase, to catalyze the reduction of superoxide to hydrogen peroxide (By similarity).
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-AMU is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AMU OCA].
+Check<jmol>
-[[Category: Single protein]]
+  <jmolCheckbox>
-[[Category: Superoxide reductase]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/am/2amu_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2amu ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Thermotoga maritima]]
-[[Category: JCSG, Joint Center for Structural Genomics.]]
-[[Category: Jcsg]]
-[[Category: Joint center for structural genomic]]
-[[Category: Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Structural genomic]]
-[[Category: Tm0658]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 19:13:50 2008''