1vm7: Difference between revisions

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-[[Image:1vm7.gif|left|200px]]
- {{Structure
+==Crystal structure of Ribokinase (TM0960) from Thermotoga maritima at 2.15 A resolution==
-|PDB= 1vm7 |SIZE=350|CAPTION= <scene name='initialview01'>1vm7</scene>, resolution 2.15&Aring;
+<StructureSection load='1vm7' size='340' side='right'caption='[[1vm7]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND=
+<table><tr><td colspan='2'>[[1vm7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VM7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VM7 FirstGlance]. <br>
-|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribokinase Ribokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.15 2.7.1.15] </span>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-|GENE= TM0960 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243274 Thermotoga maritima MSB8])
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vm7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vm7 OCA], [https://pdbe.org/1vm7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vm7 RCSB], [https://www.ebi.ac.uk/pdbsum/1vm7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vm7 ProSAT], [https://www.topsan.org/Proteins/JCSG/1vm7 TOPSAN]</span></td></tr>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01174 ribokinase], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1105 FruK]</span>
+</table>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vm7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vm7 OCA], [http://www.ebi.ac.uk/pdbsum/1vm7 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1vm7 RCSB]</span>
+== Function ==
-}}
+[https://www.uniprot.org/uniprot/Q9X055_THEMA Q9X055_THEMA]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/1vm7_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vm7 ConSurf].
+<div style="clear:both"></div>
-'''Crystal structure of Ribokinase (TM0960) from Thermotoga maritima at 2.15 A resolution'''
+==See Also==
+*[[Ribokinase 3D structures|Ribokinase 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-VM7 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima_msb8 Thermotoga maritima msb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VM7 OCA].
+[[Category: Large Structures]]
-[[Category: Ribokinase]]
+[[Category: Thermotoga maritima MSB8]]
-[[Category: Single protein]]
-[[Category: Thermotoga maritima msb8]]
-[[Category: JCSG, Joint Center for Structural Genomics.]]
-[[Category: jcsg]]
-[[Category: joint center for structural genomic]]
-[[Category: protein structure initiative]]
-[[Category: psi]]
-[[Category: ribokinase]]
-[[Category: structural genomic]]
-[[Category: tm0960]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Mar 25 23:27:11 2008''