1o5u: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1o5u.gif|left|200px]]
- {{Structure
+==Crystal structure of a duf861 family protein (tm1112) from thermotoga maritima at 1.83 A resolution==
-|PDB= 1o5u |SIZE=350|CAPTION= <scene name='initialview01'>1o5u</scene>, resolution 1.83&Aring;
+<StructureSection load='1o5u' size='340' side='right'caption='[[1o5u]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene>
+<table><tr><td colspan='2'>[[1o5u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O5U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1O5U FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
-|GENE= TM1112 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3450 COG3450]</span>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1o5u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o5u OCA], [https://pdbe.org/1o5u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1o5u RCSB], [https://www.ebi.ac.uk/pdbsum/1o5u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1o5u ProSAT], [https://www.topsan.org/Proteins/JCSG/1o5u TOPSAN]</span></td></tr>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o5u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o5u OCA], [http://www.ebi.ac.uk/pdbsum/1o5u PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=1o5u RCSB]</span>
+</table>
-}}
+== Function ==
+[https://www.uniprot.org/uniprot/Q9X0J6_THEMA Q9X0J6_THEMA]
-'''Crystal structure of a novel Thermotoga maritima enzyme (TM1112) from Thermotoga maritima at 1.83 A resolution'''
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
-==About this Structure==
+  <jmolCheckbox>
-O5U is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O5U OCA].
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o5/1o5u_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-==Reference==
+    <text>to colour the structure by Evolutionary Conservation</text>
-Crystal structure of a novel Thermotoga maritima enzyme (TM1112) from the cupin family at 1.83 A resolution., McMullan D, Schwarzenbacher R, Jaroszewski L, von Delft F, Klock HE, Vincent J, Quijano K, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Dai X, Deacon AM, DiDonato M, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Karlak C, Koesema E, Kreusch A, Kuhn P, Levin I, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Reyes R, Rezezadeh F, Robb A, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Lesley SA, Wilson IA, Proteins. 2004 Aug 15;56(3):615-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15229894 15229894]
+  </jmolCheckbox>
-[[Category: Single protein]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1o5u ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Thermotoga maritima]]
-[[Category: JCSG, Joint Center for Structural Genomics.]]
-[[Category: jcsg]]
-[[Category: joint center for structural genomic]]
-[[Category: novel thermotoga maritima enzyme]]
-[[Category: protein structure initiative]]
-[[Category: psi]]
-[[Category: structural genomic]]
-[[Category: tm1112]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Mar 25 23:25:31 2008''