5iyv: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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 ==Crystal structure of the Arabidopsis receptor kinase HAESA LRR ectdomain in complex with the peptide hormone IDL1.==
-<StructureSection load='5iyv' size='340' side='right' caption='[[5iyv]], [[Resolution|resolution]] 2.56&Aring;' scene=''>
+<StructureSection load='5iyv' size='340' side='right'caption='[[5iyv]], [[Resolution|resolution]] 2.56&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5iyv]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IYV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5IYV FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5iyv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IYV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IYV FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.56&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5iyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5iyv OCA], [http://pdbe.org/5iyv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5iyv RCSB], [http://www.ebi.ac.uk/pdbsum/5iyv PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5iyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5iyv OCA], [https://pdbe.org/5iyv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5iyv RCSB], [https://www.ebi.ac.uk/pdbsum/5iyv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5iyv ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/RLK5_ARATH RLK5_ARATH]] Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates that controls floral organ abscission. May interact with the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) ligands family.<ref>PMID:10640280</ref> <ref>PMID:18660431</ref> <ref>PMID:18809915</ref>  [[http://www.uniprot.org/uniprot/IDL1_ARATH IDL1_ARATH]] Involved in an ethylene-independent separation step of floral abscission. May act with RLK5 and HSL2 as ligand-receptor pairs.<ref>PMID:18660431</ref>
+[https://www.uniprot.org/uniprot/RLK5_ARATH RLK5_ARATH] Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates that controls floral organ abscission. May interact with the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) ligands family.<ref>PMID:10640280</ref> <ref>PMID:18660431</ref> <ref>PMID:18809915</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
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 __TOC__
 </StructureSection>
-[[Category: Hothorn, M]]
+[[Category: Arabidopsis thaliana]]
-[[Category: Santiago, J]]
+[[Category: Large Structures]]
-[[Category: Membrane receptor kinase]]
+[[Category: Hothorn M]]
-[[Category: Organ shedding]]
+[[Category: Santiago J]]
-[[Category: Peptide hormone receptor]]
-[[Category: Plant development]]
-[[Category: Signaling complex]]
-[[Category: Signaling protein]]