2c5j: Difference between revisions

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-==N-TERMINAL DOMAIN OF TLG1, DOMAIN-SWAPPED DIMER==
-<StructureSection load='2c5j' size='340' side='right' caption='[[2c5j]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+==N-terminal domain of tlg1, domain-swapped dimer==
+<StructureSection load='2c5j' size='340' side='right'caption='[[2c5j]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2c5j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2C5J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2C5J FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2c5j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2C5J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2C5J FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2c5i|2c5i]], [[2c5k|2c5k]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2c5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2c5j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2c5j RCSB], [http://www.ebi.ac.uk/pdbsum/2c5j PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2c5j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2c5j OCA], [https://pdbe.org/2c5j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2c5j RCSB], [https://www.ebi.ac.uk/pdbsum/2c5j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2c5j ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/TLG1_YEAST TLG1_YEAST] SNARE protein (of Qc type) involved in membrane fusion probably in retrograde traffic of cytosolic double-membrane vesicles derived from both, early and possibly late endosomes/PVC (prevacuolar compartment) back to the trans-Golgi network (TGN or late Golgi). It has been reported to function both as a (target membrane) t-SNARE and as a (vesicle) v-SNARE. Upon vesicle tethering to the target membrane, which requires additional proteins, a SNARE-pin is formed. This is a very stable 4 parallel alpha-helical coil bundle consisting of 4 SNARE domains (usually one of each type: Qa, Qb, Qc, and R), of which at least one is anchored in the opposite membrane. The formation of the SNARE-pin is believed to bring the two membranes in close proximity and to provide the energy to drive membrane fusion. Through its interaction with the VFT (or GARP) complex, it may also contribute to vesicle recognition specificity and tethering. Regulation of SNARE-pin formation also seems to depend on the phosphorylation state of the protein, phosphorylation by TPK1 causing inhibition and dephosphorylation by SIT4 activation.<ref>PMID:9427746</ref> <ref>PMID:10397773</ref> <ref>PMID:11689439</ref> <ref>PMID:11739407</ref> <ref>PMID:12377769</ref> <ref>PMID:12686613</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 14: / Line 17: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 2c5j" style="background-color:#fffaf0;"></div>
 == References ==
 <references/>
 __TOC__
 </StructureSection>
+[[Category: Large Structures]]
 [[Category: Saccharomyces cerevisiae]]
-[[Category: Evans, P R]]
+[[Category: Evans PR]]
-[[Category: Fridmann-Sirkis, Y]]
+[[Category: Fridmann-Sirkis Y]]
-[[Category: Kent, H M]]
+[[Category: Kent HM]]
-[[Category: Lewis, M J]]
+[[Category: Lewis MJ]]
-[[Category: Pelham, H R.B]]
+[[Category: Pelham HRB]]
-[[Category: Phosphorylation]]
-[[Category: Protein transport]]
-[[Category: Snare]]
-[[Category: Transport]]