3pj9: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:


==Crystal structure of a Nucleoside Diphosphate Kinase from Campylobacter jejuni==
==Crystal structure of a Nucleoside Diphosphate Kinase from Campylobacter jejuni==
<StructureSection load='3pj9' size='340' side='right' caption='[[3pj9]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='3pj9' size='340' side='right'caption='[[3pj9]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3pj9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Camje Camje]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PJ9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3PJ9 FirstGlance]. <br>
<table><tr><td colspan='2'>[[3pj9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PJ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PJ9 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Cj0332c, ndk ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=192222 CAMJE])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pj9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pj9 OCA], [https://pdbe.org/3pj9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pj9 RCSB], [https://www.ebi.ac.uk/pdbsum/3pj9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pj9 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3pj9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pj9 OCA], [http://pdbe.org/3pj9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3pj9 RCSB], [http://www.ebi.ac.uk/pdbsum/3pj9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3pj9 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/NDK_CAMJE NDK_CAMJE]] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]  
[https://www.uniprot.org/uniprot/NDK_CAMJE NDK_CAMJE] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]


==See Also==
==See Also==
*[[Nucleoside diphosphate kinase|Nucleoside diphosphate kinase]]
*[[Nucleoside diphosphate kinase 3D structures|Nucleoside diphosphate kinase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Camje]]
[[Category: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]]
[[Category: Nucleoside-diphosphate kinase]]
[[Category: Large Structures]]
[[Category: Anderson, W F]]
[[Category: Anderson WF]]
[[Category: Structural genomic]]
[[Category: Edwards A]]
[[Category: Edwards, A]]
[[Category: Filippova EV]]
[[Category: Filippova, E V]]
[[Category: Onopriyenko O]]
[[Category: Onopriyenko, O]]
[[Category: Savchenko A]]
[[Category: Savchenko, A]]
[[Category: Wawrzak Z]]
[[Category: Wawrzak, Z]]
[[Category: Campylobacter jejuni subsp. jejuni nctc 11168]]
[[Category: Csgid]]
[[Category: Ndk]]
[[Category: Nucleoside diphosphate kinase]]
[[Category: Transferase]]

Latest revision as of 12:55, 6 September 2023

Crystal structure of a Nucleoside Diphosphate Kinase from Campylobacter jejuniCrystal structure of a Nucleoside Diphosphate Kinase from Campylobacter jejuni

Structural highlights

3pj9 is a 4 chain structure with sequence from Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.1Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

NDK_CAMJE Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]

See Also

3pj9, resolution 2.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA