3o2r: Difference between revisions

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-[[Image:3o2r.png|left|200px]]
-{{STRUCTURE_3o2r|  PDB=3o2r  |  SCENE=  }}
+==Structural flexibility in region involved in dimer formation of nuclease domain of Ribonuclase III (rnc) from Campylobacter jejuni==
+<StructureSection load='3o2r' size='340' side='right'caption='[[3o2r]], [[Resolution|resolution]] 1.25&Aring;' scene=''>
-===Structural flexibility in region involved in dimer formation of nuclease domain of Ribonuclase III (rnc) from Campylobacter jejuni===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3o2r]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O2R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3O2R FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.251&#8491;</td></tr>
-==About this Structure==
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MLZ:N-METHYL-LYSINE'>MLZ</scene></td></tr>
-[[3o2r]] is a 4 chain structure of [[Ribonuclease]] with sequence from [http://en.wikipedia.org/wiki/Campylobacter_jejuni_subsp._jejuni Campylobacter jejuni subsp. jejuni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O2R OCA].
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3o2r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3o2r OCA], [https://pdbe.org/3o2r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3o2r RCSB], [https://www.ebi.ac.uk/pdbsum/3o2r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3o2r ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RNC_CAMJE RNC_CAMJE] Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity).  CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In this organism endogenous ribonuclease 3 and Cas9 are required for correct coprocessing of pre-crRNA and the trans-encoded small RNA (tracrRNA). Cas9, crRNA and tracrRNA are required for cleavage of invading DNA (Probable). Complements pre-crRNA and tracrRNA coprocessing defects in an rnc deletion in S.pyogenes strain 370 (PubMed:24270795).<ref>PMID:24270795</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o2/3o2r_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3o2r ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Ribonuclease|Ribonuclease]]
+*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
-[[Category: Campylobacter jejuni subsp. jejuni]]
+== References ==
-[[Category: Ribonuclease III]]
+<references/>
-[[Category: Anderson, W F.]]
+__TOC__
-[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+</StructureSection>
-[[Category: Dubrovska, I.]]
+[[Category: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]]
-[[Category: Halavaty, A.]]
+[[Category: Large Structures]]
-[[Category: Minasov, G.]]
+[[Category: Anderson WF]]
-[[Category: Papazisi, L.]]
+[[Category: Dubrovska I]]
-[[Category: Shuvalova, L.]]
+[[Category: Halavaty A]]
-[[Category: Winsor, J.]]
+[[Category: Minasov G]]
-[[Category: Center for structural genomics of infectious disease]]
+[[Category: Papazisi L]]
-[[Category: Csgid]]
+[[Category: Shuvalova L]]
-[[Category: Hydrolase]]
+[[Category: Winsor J]]
-[[Category: Nuclease domain]]
-[[Category: Ribonuclase iii]]
-[[Category: Structural genomic]]