3nkb: Difference between revisions

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OCA

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 ==A 1.9A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage==
-<StructureSection load='3nkb' size='340' side='right' caption='[[3nkb]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
+<StructureSection load='3nkb' size='340' side='right'caption='[[3nkb]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3nkb]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NKB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NKB FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3nkb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NKB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NKB FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.916&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DUR:2-DEOXYURIDINE'>DUR</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DUR:2-DEOXYURIDINE'>DUR</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1cx0|1cx0]], [[1sj3|1sj3]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nkb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nkb OCA], [https://pdbe.org/3nkb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nkb RCSB], [https://www.ebi.ac.uk/pdbsum/3nkb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nkb ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3nkb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nkb OCA], [http://pdbe.org/3nkb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3nkb RCSB], [http://www.ebi.ac.uk/pdbsum/3nkb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3nkb ProSAT]</span></td></tr>
 </table>
 <div style="background-color:#fffaf0;">
@@ Line 20: / Line 19: @@
 ==See Also==
-*[[Ribozyme|Ribozyme]]
+*[[Ribozyme 3D structures|Ribozyme 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Bevilacqua, P C]]
+[[Category: Homo sapiens]]
-[[Category: Chadalavada, D M]]
+[[Category: Large Structures]]
-[[Category: Chase, E]]
+[[Category: Bevilacqua PC]]
-[[Category: Chen, J H]]
+[[Category: Chadalavada DM]]
-[[Category: Golden, B L]]
+[[Category: Chase E]]
-[[Category: Yajima, R]]
+[[Category: Chen J-H]]
-[[Category: Catalytic rna]]
+[[Category: Golden BL]]
-[[Category: Dna]]
+[[Category: Yajima R]]
-[[Category: Metal-mediated catalysis]]
-[[Category: Phosphodiester cleavage]]
-[[Category: Rna]]