3mwt: Difference between revisions

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-[[Image:3mwt.png|left|200px]]
-<!--
+==Crystal structure of Lassa fever virus nucleoprotein in complex with Mn2+==
-The line below this paragraph, containing "STRUCTURE_3mwt", creates the "Structure Box" on the page.
+<StructureSection load='3mwt' size='340' side='right'caption='[[3mwt]], [[Resolution|resolution]] 1.98&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3mwt]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Lassa_virus_Josiah Lassa virus Josiah]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MWT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MWT FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.982&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-{{STRUCTURE_3mwt|  PDB=3mwt  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mwt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mwt OCA], [https://pdbe.org/3mwt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mwt RCSB], [https://www.ebi.ac.uk/pdbsum/3mwt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mwt ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/NCAP_LASSJ NCAP_LASSJ] Encapsidates the genome, protecting it from nucleases. The encapsidated genomic RNA is termed the nucleocapsid (NC). Serves as template for viral transcription and replication. The increased presence of protein N in host cell does not seem to trigger the switch from transcription to replication as observed in other negative strain RNA viruses. Disables the host innate defense by interfering with beta interferon (IFN-beta) production. Strongly inhibits the nuclear translocation of IRF3, a protein involved in IFN activation pathway. Also inhibits the activation of IFN-beta and IRF3-dependent promoters (By similarity).
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Lassa virus, the causative agent of Lassa fever, causes thousands of deaths annually and is a biological threat agent, for which there is no vaccine and limited therapy. The nucleoprotein (NP) of Lassa virus has essential roles in viral RNA synthesis and immune suppression, the molecular mechanisms of which are poorly understood. Here we report the crystal structure of Lassa virus NP at 1.80 A resolution, which reveals amino (N)- and carboxy (C)-terminal domains with structures unlike any of the reported viral NPs. The N domain folds into a novel structure with a deep cavity for binding the m7GpppN cap structure that is required for viral RNA transcription, whereas the C domain contains 3'-5' exoribonuclease activity involved in suppressing interferon induction. To our knowledge this is the first X-ray crystal structure solved for an arenaviral NP, which reveals its unexpected functions and indicates unique mechanisms in cap binding and immune evasion. These findings provide great potential for vaccine and drug development.
-===Crystal structure of Lassa fever virus nucleoprotein in complex with Mn2+===
+Cap binding and immune evasion revealed by Lassa nucleoprotein structure.,Qi X, Lan S, Wang W, Schelde LM, Dong H, Wallat GD, Ly H, Liang Y, Dong C Nature. 2010 Nov 17. PMID:21085117<ref>PMID:21085117</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 3mwt" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_21085117}}, adds the Publication Abstract to the page
+*[[Nucleoprotein 3D structures|Nucleoprotein 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 21085117 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_21085117}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-[[3mwt]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Lassa_virus Lassa virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MWT OCA].
+[[Category: Lassa virus Josiah]]
+[[Category: Dong C]]
-==Reference==
+[[Category: Dong H]]
-<ref group="xtra">PMID:21085117</ref><references group="xtra"/>
+[[Category: Lan S]]
-[[Category: Lassa virus]]
+[[Category: Liang Y]]
-[[Category: Dong, C.]]
+[[Category: Ly H]]
-[[Category: Dong, H.]]
+[[Category: Qi X]]
-[[Category: Lan, S.]]
+[[Category: Schelde LM]]
-[[Category: Liang, Y.]]
+[[Category: Wallat G]]
-[[Category: Ly, H.]]
+[[Category: Wang W]]
-[[Category: Qi, X.]]
-[[Category: SSPF, Scottish Structural Proteomics Facility.]]
-[[Category: Schelde, L M.]]
-[[Category: Wallat, G.]]
-[[Category: Wang, W.]]
-[[Category: Lassa fever virus]]
-[[Category: Nuclear protein]]
-[[Category: Nucleoprotein]]
-[[Category: Scottish structural proteomics facility]]
-[[Category: Sspf]]
-[[Category: Structural genomic]]