3lv5: Difference between revisions

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 ==Crystal structure of the mutant I199E of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with inhibitor BMP==
-<StructureSection load='3lv5' size='340' side='right' caption='[[3lv5]], [[Resolution|resolution]] 1.44&Aring;' scene=''>
+<StructureSection load='3lv5' size='340' side='right'caption='[[3lv5]], [[Resolution|resolution]] 1.44&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3lv5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Metth Metth]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LV5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LV5 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3lv5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus_str._Delta_H Methanothermobacter thermautotrophicus str. Delta H]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LV5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LV5 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMP:6-HYDROXYURIDINE-5-PHOSPHATE'>BMP</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.444&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3lhw|3lhw]], [[3ltp|3ltp]], [[3lts|3lts]], [[3lty|3lty]], [[3lv6|3lv6]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMP:6-HYDROXYURIDINE-5-PHOSPHATE'>BMP</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pyrF, MTH_129 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=187420 METTH])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lv5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lv5 OCA], [https://pdbe.org/3lv5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lv5 RCSB], [https://www.ebi.ac.uk/pdbsum/3lv5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lv5 ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Orotidine-5'-phosphate_decarboxylase Orotidine-5'-phosphate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.23 4.1.1.23] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lv5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lv5 OCA], [http://pdbe.org/3lv5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lv5 RCSB], [http://www.ebi.ac.uk/pdbsum/3lv5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lv5 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/PYRF_METTH PYRF_METTH]] Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP).[HAMAP-Rule:MF_01200_A]
+[https://www.uniprot.org/uniprot/PYRF_METTH PYRF_METTH] Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP).[HAMAP-Rule:MF_01200_A]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 33: / Line 31: @@
 ==See Also==
-*[[Uridine 5'-monophosphate synthase|Uridine 5'-monophosphate synthase]]
+*[[Uridine 5'-monophosphate synthase 3D structures|Uridine 5'-monophosphate synthase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Metth]]
+[[Category: Large Structures]]
-[[Category: Orotidine-5'-phosphate decarboxylase]]
+[[Category: Methanothermobacter thermautotrophicus str. Delta H]]
-[[Category: Almo, S C]]
+[[Category: Almo SC]]
-[[Category: Fedorov, A A]]
+[[Category: Fedorov AA]]
-[[Category: Fedorov, E V]]
+[[Category: Fedorov EV]]
-[[Category: Gerlt, J A]]
+[[Category: Gerlt JA]]
-[[Category: Wood, B M]]
+[[Category: Wood BM]]
-[[Category: Decarboxylase]]
-[[Category: Lyase]]
-[[Category: Mutant i199e]]
-[[Category: Pyrimidine biosynthesis]]