3l75: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{STRUCTURE_3l75|  PDB=3l75  |  SCENE=  }}
-===Cytochrome BC1 complex from chicken with fenamidone bound===
-==Function==
+==Cytochrome BC1 complex from chicken with fenamidone bound==
-[[http://www.uniprot.org/uniprot/D0VX30_CHICK D0VX30_CHICK]] Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain (By similarity).[PIRNR:PIRNR000022] [[http://www.uniprot.org/uniprot/CYB_CHICK CYB_CHICK]] Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (By similarity). [[http://www.uniprot.org/uniprot/UCRI_CHICK UCRI_CHICK]] Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (By similarity).
+<StructureSection load='3l75' size='340' side='right'caption='[[3l75]], [[Resolution|resolution]] 2.79&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3l75]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L75 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L75 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.79&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=FNM:(5S)-5-METHYL-2-(METHYLSULFANYL)-5-PHENYL-3-(PHENYLAMINO)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>FNM</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PEE:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE'>PEE</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene>, <scene name='pdbligand=UQ:COENZYME+Q10,+(2Z,6E,10Z,14E,18E,22E,26Z)-ISOMER'>UQ</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l75 OCA], [https://pdbe.org/3l75 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l75 RCSB], [https://www.ebi.ac.uk/pdbsum/3l75 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l75 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/D0VX31_CHICK D0VX31_CHICK]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l7/3l75_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l75 ConSurf].
+<div style="clear:both"></div>
-==About this Structure==
+==See Also==
-[[3l75]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L75 OCA].
+*[[Cytochrome bc1 3D structures|Cytochrome bc1 3D structures]]
+__TOC__
+</StructureSection>
 [[Category: Gallus gallus]]
-[[Category: Ubiquinol--cytochrome-c reductase]]
+[[Category: Large Structures]]
-[[Category: Berry, E A.]]
+[[Category: Berry EA]]
-[[Category: Huang, L.]]
+[[Category: Huang L]]
-[[Category: Azoxystrobin oxidoreductase]]
-[[Category: Complex iii]]
-[[Category: Cytochrome b]]
-[[Category: Cytochrome bc1]]
-[[Category: Cytochrome c1]]
-[[Category: Disulfide bond]]
-[[Category: Electron transport]]
-[[Category: Heme]]
-[[Category: Heme protein]]
-[[Category: Inner membrane]]
-[[Category: Iron]]
-[[Category: Iron-sulfur]]
-[[Category: Membrane]]
-[[Category: Membrane protein]]
-[[Category: Metal-binding]]
-[[Category: Mitochondrial inner membrane]]
-[[Category: Mitochondrial processing protein]]
-[[Category: Mitochondrion]]
-[[Category: Mitochondrion inner membrane]]
-[[Category: Oxidoreductase]]
-[[Category: Redox enzyme respiratory chain]]
-[[Category: Respiratory chain]]
-[[Category: Rieske iron sulfur protein]]
-[[Category: Stigmatellin]]
-[[Category: Strobilurins binding]]
-[[Category: Transit peptide]]
-[[Category: Transmembrane]]
-[[Category: Transport]]
-[[Category: Ubiquinone]]