3krb: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:3krb.jpg|left|200px]]
-<!--
+==Structure of Aldose Reductase from Giardia Lamblia at 1.75A Resolution==
-The line below this paragraph, containing "STRUCTURE_3krb", creates the "Structure Box" on the page.
+<StructureSection load='3krb' size='340' side='right'caption='[[3krb]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3krb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Giardia_lamblia_ATCC_50803 Giardia lamblia ATCC 50803]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KRB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KRB FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-{{STRUCTURE_3krb|  PDB=3krb  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3krb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3krb OCA], [https://pdbe.org/3krb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3krb RCSB], [https://www.ebi.ac.uk/pdbsum/3krb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3krb ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/A8BGX6_GIAIC A8BGX6_GIAIC]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kr/3krb_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3krb ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Giardia lamblia is an anaerobic aerotolerant eukaryotic parasite of the intestines. It is believed to have diverged early from eukarya during evolution and is thus lacking in many of the typical eukaryotic organelles and biochemical pathways. Most conspicuously, mitochondria and the associated machinery of oxidative phosphorylation are absent; instead, energy is derived from substrate-level phosphorylation. Here, the 1.75 A resolution crystal structure of G. lamblia aldose reductase heterologously expressed in Escherichia coli is reported. As in other oxidoreductases, G. lamblia aldose reductase adopts a TIM-barrel conformation with the NADP(+)-binding site located within the eight beta-strands of the interior.
-===Structure of Aldose Reductase from Giardia Lamblia at 1.75A Resolution===
+Structure of aldose reductase from Giardia lamblia.,Ferrell M, Abendroth J, Zhang Y, Sankaran B, Edwards TE, Staker BL, Van Voorhis WC, Stewart LJ, Myler PJ Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Sep 1;67(Pt, 9):1113-7. Epub 2011 Aug 16. PMID:21904059<ref>PMID:21904059</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 3krb" style="background-color:#fffaf0;"></div>
-==About this Structure==
+==See Also==
-KRB is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Giardia_lamblia_atcc_50803 Giardia lamblia atcc 50803]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KRB OCA].
+*[[Aldose reductase 3D structures|Aldose reductase 3D structures]]
-[[Category: Aldehyde reductase]]
+== References ==
-[[Category: Giardia lamblia atcc 50803]]
+<references/>
-[[Category: Ssgcid, Seattle Structural Genomics Center for Infectious Disease.]]
+__TOC__
-[[Category: Aldose reductase]]
+</StructureSection>
-[[Category: Emerald biostructure]]
+[[Category: Giardia lamblia ATCC 50803]]
-[[Category: Giardia lamblia]]
+[[Category: Large Structures]]
-[[Category: Niaid]]
-[[Category: Nih]]
-[[Category: Oxidoreductase]]
-[[Category: Sbri]]
-[[Category: Seattle structural genomics center for infectious disease]]
-[[Category: Ssgcid]]
-[[Category: Structural genomic]]
-[[Category: University of washington]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec  2 10:33:28 2009''