3knu: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(6 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3knu.jpg|left|200px]]


<!--
==Crystal structure of tRNA (guanine-N1)-methyltransferase from Anaplasma phagocytophilum==
The line below this paragraph, containing "STRUCTURE_3knu", creates the "Structure Box" on the page.
<StructureSection load='3knu' size='340' side='right'caption='[[3knu]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3knu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Anaplasma_phagocytophilum_str._HZ Anaplasma phagocytophilum str. HZ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KNU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KNU FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3knu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3knu OCA], [https://pdbe.org/3knu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3knu RCSB], [https://www.ebi.ac.uk/pdbsum/3knu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3knu ProSAT]</span></td></tr>
{{STRUCTURE_3knu| PDB=3knu |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/TRMD_ANAPZ TRMD_ANAPZ] Specifically methylates guanosine-37 in various tRNAs (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kn/3knu_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3knu ConSurf].
<div style="clear:both"></div>


===Crystal structure of tRNA (guanine-N1)-methyltransferase from Anaplasma phagocytophilum===
==See Also==
 
*[[TRNA methyltransferase 3D structures|TRNA methyltransferase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
3KNU is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Anaplasma_phagocytophilum_hz Anaplasma phagocytophilum hz]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KNU OCA].
[[Category: Anaplasma phagocytophilum str. HZ]]
[[Category: Anaplasma phagocytophilum hz]]
[[Category: Large Structures]]
[[Category: SSGCID, Seattle Structural Genomics Center for Infectious Disease.]]
[[Category: Cytoplasm]]
[[Category: Methyltransferase]]
[[Category: Niaid]]
[[Category: Protein knot]]
[[Category: Rna-binding protein]]
[[Category: S-adenosyl-l-methionine]]
[[Category: Seattle structural genomics center for infectious disease]]
[[Category: Ssgcid]]
[[Category: Transferase]]
[[Category: Trefoil knot]]
[[Category: Trna methyl transferase]]
[[Category: Trna processing]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 25 10:22:44 2009''

Latest revision as of 11:19, 6 September 2023

Crystal structure of tRNA (guanine-N1)-methyltransferase from Anaplasma phagocytophilumCrystal structure of tRNA (guanine-N1)-methyltransferase from Anaplasma phagocytophilum

Structural highlights

3knu is a 4 chain structure with sequence from Anaplasma phagocytophilum str. HZ. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.25Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

TRMD_ANAPZ Specifically methylates guanosine-37 in various tRNAs (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3knu, resolution 2.25Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=3knu&oldid=3865957"