3is5: Difference between revisions

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-{{Seed}}
-[[Image:3is5.jpg|left|200px]]
-<!--
+==Crystal structure of CDPK kinase domain from toxoplasma Gondii, TGME49_018720==
-The line below this paragraph, containing "STRUCTURE_3is5", creates the "Structure Box" on the page.
+<StructureSection load='3is5' size='340' side='right'caption='[[3is5]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3is5]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Toxoplasma_gondii_ME49 Toxoplasma gondii ME49]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IS5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IS5 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-{{STRUCTURE_3is5|  PDB=3is5  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3is5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3is5 OCA], [https://pdbe.org/3is5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3is5 RCSB], [https://www.ebi.ac.uk/pdbsum/3is5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3is5 ProSAT]</span></td></tr>
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/is/3is5_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3is5 ConSurf].
+<div style="clear:both"></div>
-===Crystal structure of CDPK kinase domain from toxoplasma Gondii, TGME49_018720===
+==See Also==
+*[[Calcium-dependent protein kinase|Calcium-dependent protein kinase]]
+__TOC__
-==About this Structure==
+</StructureSection>
-IS5 is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Toxoplasma_gondii_me49 Toxoplasma gondii me49]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IS5 OCA].
+[[Category: Large Structures]]
-[[Category: Calcium/calmodulin-dependent protein kinase]]
+[[Category: Toxoplasma gondii ME49]]
-[[Category: Toxoplasma gondii me49]]
+[[Category: Arrowsmith CH]]
-[[Category: Arrowsmith, C H.]]
+[[Category: Artz JD]]
-[[Category: Artz, J D.]]
+[[Category: Bochkarev A]]
-[[Category: Bochkarev, A.]]
+[[Category: Bountra C]]
-[[Category: Bountra, C.]]
+[[Category: Cossar D]]
-[[Category: Cossar, D.]]
+[[Category: Edwards AM]]
-[[Category: Edwards, A M.]]
+[[Category: Hui R]]
-[[Category: Hui, R.]]
+[[Category: Hutchinson A]]
-[[Category: Hutchinson, A.]]
+[[Category: Kozieradzki I]]
-[[Category: Kozieradzki, I.]]
+[[Category: Lin YH]]
-[[Category: Lin, Y H.]]
+[[Category: MacKenzie F]]
-[[Category: MacKenzie, F.]]
+[[Category: Senisterra G]]
-[[Category: SGC, Structural Genomics Consortium.]]
+[[Category: Weigelt J]]
-[[Category: Senisterra, G.]]
+[[Category: Wernimont AK]]
-[[Category: Weigelt, J.]]
-[[Category: Wernimont, A K.]]
-[[Category: Atp-binding]]
-[[Category: Calcium]]
-[[Category: Cdpk]]
-[[Category: Kinase]]
-[[Category: Nucleotide-binding]]
-[[Category: Parasitology]]
-[[Category: Serine/threonine-protein kinase]]
-[[Category: Sgc]]
-[[Category: Structural genomic]]
-[[Category: Structural genomics consortium]]
-[[Category: Toxoplasma gondii]]
-[[Category: Transferase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 21 10:39:18 2009''