3hqj: Difference between revisions

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-[[Image:3hqj.png|left|200px]]
-<!--
+==Structure-function analysis of Mycobacterium tuberculosis acyl carrier protein synthase (AcpS).==
-The line below this paragraph, containing "STRUCTURE_3hqj", creates the "Structure Box" on the page.
+<StructureSection load='3hqj' size='340' side='right'caption='[[3hqj]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3hqj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HQJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HQJ FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-{{STRUCTURE_3hqj|  PDB=3hqj  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hqj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hqj OCA], [https://pdbe.org/3hqj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hqj RCSB], [https://www.ebi.ac.uk/pdbsum/3hqj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hqj ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/ACPS_MYCTU ACPS_MYCTU] Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein (By similarity).
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hq/3hqj_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hqj ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+We have solved the crystal structure of the acyl carrier protein synthase (AcpS) from Mycobacterium tuberculosis (Mtb) at 1.95 A resolution. AcpS, a 4-phosphopantetheinyl transferase, activates two distinct acyl carrier proteins (ACPs) that are present in fatty acid synthase (FAS) systems FAS-I and FAS-II, the ACP-I domain and the mycobacterial ACP-II protein (ACPM), respectively. Mtb, the causal agent of tuberculosis (TB), and all other members of the Corynebacterineae family are unique in possessing both FAS systems to produce and to elongate fatty acids to mycolic acids, the hallmark of mycobacterial cell wall. Various steps in this process are prime targets for first-line anti-TB agents. A comparison of the Mtb AcpS structure determined here with those of other AcpS proteins revealed unique structural features in Mtb AcpS, namely, the presence of an elongated helix followed by a flexible loop and a moderately electronegative surface unlike the positive surface common to other AcpSs. A structure-based sequence comparison between AcpS and its ACP substrates from various species demonstrated that the proteins of the Corynebacterineae family display high sequence conservation, forming a segregated subgroup of AcpS and ACPs. Analysis of the putative interactions between AcpS and ACPM from Mtb, based on a comparison with the complex structure from Bacillus subtilis, showed that the Mtb AcpS and ACPM lack the electrostatic complementarity observed in B. subtilis. Taken together, the common characteristic of the Corynebacterineae family is likely reflected in the participation of different residues and interactions used for binding the Mtb AcpS to ACP-I and ACPM. The distinct features and essentiality of AcpS, as well as the mode of interaction with ACPM and ACP-I in Mtb, could be exploited for the design of AcpS inhibitors, which, similarly to other inhibitors of fatty acid synthesis, are expected to be effective anti-TB-specific drugs.
-===Structure-function analysis of Mycobacterium tuberculosis acyl carrier protein synthase (AcpS).===
+Structure-function analysis of the acyl carrier protein synthase (AcpS) from Mycobacterium tuberculosis.,Dym O, Albeck S, Peleg Y, Schwarz A, Shakked Z, Burstein Y, Zimhony O J Mol Biol. 2009 Nov 6;393(4):937-50. Epub 2009 Sep 3. PMID:19733180<ref>PMID:19733180</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 3hqj" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_19733180}}, adds the Publication Abstract to the page
+*[[Acyl carrier protein synthase|Acyl carrier protein synthase]]
-(as it appears on PubMed at http://www.pubmed.gov), where 19733180 is the PubMed ID number.
+*[[Acyl carrier protein synthase 3D structures|Acyl carrier protein synthase 3D structures]]
--->
+*[[Proteins from Mycobacterium tuberculosis|Proteins from Mycobacterium tuberculosis]]
-{{ABSTRACT_PUBMED_19733180}}
+== References ==
+<references/>
-==About this Structure==
+__TOC__
-[[3hqj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HQJ OCA].
+</StructureSection>
+[[Category: Large Structures]]
-==Reference==
-<ref group="xtra">PMID:019733180</ref><references group="xtra"/>
 [[Category: Mycobacterium tuberculosis]]
-[[Category: Albeck,S.]]
+[[Category: Albeck S]]
-[[Category: Burstein,Y.]]
+[[Category: Burstein Y]]
-[[Category: Dym,O.]]
+[[Category: Dym O]]
-[[Category: ISPC, Israel Structural Proteomics Center.]]
+[[Category: Peleg Y]]
-[[Category: Peleg,Y.]]
+[[Category: Schwarz A]]
-[[Category: Schwarz,A.]]
+[[Category: Shakked Z]]
-[[Category: Shakked,Z.]]
+[[Category: Zimhony O]]
-[[Category: Zimhony,O.]]
-[[Category: An/fold]]
-[[Category: Fatty acid biosynthesis]]
-[[Category: ISPC]]
-[[Category: Israel Structural Proteomics Center]]
-[[Category: Lipid synthesis]]
-[[Category: Magnesium]]
-[[Category: Metal-binding]]
-[[Category: Structural genomic]]
-[[Category: Transferase]]