3g4x: Difference between revisions

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 ==Crystal Structure of NiSOD Y9F mutant==
-<StructureSection load='3g4x' size='340' side='right' caption='[[3g4x]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
+<StructureSection load='3g4x' size='340' side='right'caption='[[3g4x]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3g4x]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3G4X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3G4X FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3g4x]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3G4X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3G4X FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.01&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1t6u|1t6u]], [[3g4z|3g4z]], [[3g50|3g50]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">2SC7G11.16c, SCO5254, sod1, sodN ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 Streptomyces coelicolor])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3g4x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3g4x OCA], [https://pdbe.org/3g4x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3g4x RCSB], [https://www.ebi.ac.uk/pdbsum/3g4x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3g4x ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3g4x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3g4x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3g4x RCSB], [http://www.ebi.ac.uk/pdbsum/3g4x PDBsum]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/SODN_STRCO SODN_STRCO]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g4/3g4x_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g4/3g4x_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3g4x ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 27: / Line 28: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 3g4x" style="background-color:#fffaf0;"></div>
 ==See Also==
-*[[Molecular Playground/Nickel Superoxide Dismutase|Molecular Playground/Nickel Superoxide Dismutase]]
+*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
-*[[Superoxide Dismutase|Superoxide Dismutase]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
+[[Category: Large Structures]]
 [[Category: Streptomyces coelicolor]]
-[[Category: Superoxide dismutase]]
+[[Category: Bryngelson PA]]
-[[Category: Bryngelson, P A]]
+[[Category: Cabelli DE]]
-[[Category: Cabelli, D E]]
+[[Category: Garman SC]]
-[[Category: Garman, S C]]
+[[Category: Guce AI]]
-[[Category: Guce, A I]]
+[[Category: Herbst RW]]
-[[Category: Herbst, R W]]
+[[Category: Higgins KA]]
-[[Category: Higgins, K A]]
+[[Category: Maroney MJ]]
-[[Category: Maroney, M J]]
+[[Category: Ryan KC]]
-[[Category: Ryan, K C]]
-[[Category: Antioxidant]]
-[[Category: Hexamer]]
-[[Category: Metal-binding]]
-[[Category: Nickel]]
-[[Category: Nisod]]
-[[Category: Oxidoreductase]]
-[[Category: Sod]]