2xuc: Difference between revisions

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-[[Image:2xuc.png|left|200px]]
-<!--
+==Natural product-guided discovery of a fungal chitinase inhibitor==
-The line below this paragraph, containing "STRUCTURE_2xuc", creates the "Structure Box" on the page.
+<StructureSection load='2xuc' size='340' side='right'caption='[[2xuc]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2xuc]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_fumigatus Aspergillus fumigatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XUC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XUC FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=XRG:1-METHYL-3-(N-METHYLCARBAMIMIDOYL)UREA'>XRG</scene></td></tr>
-{{STRUCTURE_2xuc|  PDB=2xuc  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xuc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xuc OCA], [https://pdbe.org/2xuc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xuc RCSB], [https://www.ebi.ac.uk/pdbsum/2xuc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xuc ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CHIA1_ASPFM CHIA1_ASPFM] GPI-anchored chitinase involved in the degradation of chitin, a component of the cell walls of fungi and exoskeletal elements of some animals (including worms and arthropods). Required to reshape the cell wall at the sites where cell wall remodeling and/or cell wall maturation actively take place such as sites of conidia formation.<ref>PMID:21168763</ref>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Natural products are often large, synthetically intractable molecules, yet frequently offer surprising inroads into previously unexplored chemical space for enzyme inhibitors. Argifin is a cyclic pentapeptide that was originally isolated as a fungal natural product. It competitively inhibits family 18 chitinases by mimicking the chitooligosaccharide substrate of these enzymes. Interestingly, argifin is a nanomolar inhibitor of the bacterial-type subfamily of fungal chitinases that possess an extensive chitin-binding groove, but does not inhibit the much smaller, plant-type enzymes from the same family that are involved in fungal cell division and are thought to be potential drug targets. Here we show that a small, highly efficient, argifin-derived, nine-atom fragment is a micromolar inhibitor of the plant-type chitinase ChiA1 from the opportunistic pathogen Aspergillus fumigatus. Evaluation of the binding mode with the first crystal structure of an A. fumigatus plant-type chitinase reveals that the compound binds the catalytic machinery in the same manner as observed for argifin with the bacterial-type chitinases. The structure of the complex was used to guide synthesis of derivatives to explore a pocket near the catalytic machinery. This work provides synthetically tractable plant-type family 18 chitinase inhibitors from the repurposing of a natural product.
-===NATURAL PRODUCT-GUIDED DISCOVERY OF A FUNGAL CHITINASE INHIBITOR===
+Natural product-guided discovery of a fungal chitinase inhibitor.,Rush CL, Schuttelkopf AW, Hurtado-Guerrero R, Blair DE, Ibrahim AF, Desvergnes S, Eggleston IM, van Aalten DM Chem Biol. 2010 Dec 22;17(12):1275-81. PMID:21168763<ref>PMID:21168763</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-<!--
+</div>
-The line below this paragraph, {{ABSTRACT_PUBMED_21168763}}, adds the Publication Abstract to the page
+<div class="pdbe-citations 2xuc" style="background-color:#fffaf0;"></div>
-(as it appears on PubMed at http://www.pubmed.gov), where 21168763 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_21168763}}
-==About this Structure==
-[[2xuc]] is a 3 chain structure of [[Chitinases]] with sequence from [http://en.wikipedia.org/wiki/Aspergillus_fumigatus Aspergillus fumigatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XUC OCA].
 ==See Also==
-*[[Chitinases]]
+*[[Chitinase 3D structures|Chitinase 3D structures]]
+== References ==
-==Reference==
+<references/>
-<ref group="xtra">PMID:021168763</ref><references group="xtra"/>
+__TOC__
+</StructureSection>
 [[Category: Aspergillus fumigatus]]
-[[Category: Chitinase]]
+[[Category: Large Structures]]
-[[Category: Blair, D E.]]
+[[Category: Blair DE]]
-[[Category: Desvergnes, S.]]
+[[Category: Desvergnes S]]
-[[Category: Eggleston, I M.]]
+[[Category: Eggleston IM]]
-[[Category: Hurtadoguerrero, R.]]
+[[Category: Hurtado-Guerrero R]]
-[[Category: Ibrahim, A F.M.]]
+[[Category: Ibrahim AFM]]
-[[Category: Rush, C L.]]
+[[Category: Rush CL]]
-[[Category: Schuttelkopf, A W.]]
+[[Category: Schuttelkopf AW]]
-[[Category: Vanaalten, D M.F.]]
+[[Category: Van Aalten DMF]]