3ei9: Difference between revisions

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 ==Crystal structure of K270N variant of LL-diaminopimelate aminotransferase from Arabidopsis thaliana complexed with L-Glu: External aldimine form==
-<StructureSection load='3ei9' size='340' side='right' caption='[[3ei9]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
+<StructureSection load='3ei9' size='340' side='right'caption='[[3ei9]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3ei9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EI9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EI9 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3ei9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EI9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EI9 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PL6:(E)-N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLIDENE)-L-GLUTAMIC+ACID'>PL6</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ei5|3ei5]], [[3ei6|3ei6]], [[3ei7|3ei7]], [[3ei8|3ei8]], [[3eia|3eia]], [[3eib|3eib]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PL6:(E)-N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLIDENE)-L-GLUTAMIC+ACID'>PL6</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DAP, AGD2, At4g33680, T16L1.170 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ei9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ei9 OCA], [https://pdbe.org/3ei9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ei9 RCSB], [https://www.ebi.ac.uk/pdbsum/3ei9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ei9 ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/LL-diaminopimelate_aminotransferase LL-diaminopimelate aminotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.83 2.6.1.83] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ei9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ei9 OCA], [http://pdbe.org/3ei9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ei9 RCSB], [http://www.ebi.ac.uk/pdbsum/3ei9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ei9 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/DAPAT_ARATH DAPAT_ARATH]] Required for lysine biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Not active with meso-diaminopimelate, lysine or ornithine as substrates.<ref>PMID:16361515</ref> <ref>PMID:21435399</ref>
+[https://www.uniprot.org/uniprot/DAPAT_ARATH DAPAT_ARATH] Required for lysine biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Not active with meso-diaminopimelate, lysine or ornithine as substrates.<ref>PMID:16361515</ref> <ref>PMID:21435399</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 35: / Line 33: @@
 __TOC__
 </StructureSection>
-[[Category: Arath]]
+[[Category: Arabidopsis thaliana]]
-[[Category: LL-diaminopimelate aminotransferase]]
+[[Category: Large Structures]]
-[[Category: Belkum, M J.van]]
+[[Category: Cherney MM]]
-[[Category: Cherney, M M]]
+[[Category: Clay MD]]
-[[Category: Clay, M D]]
+[[Category: James MNG]]
-[[Category: James, M N.G]]
+[[Category: Vederas JC]]
-[[Category: Vederas, J C]]
+[[Category: Watanabe N]]
-[[Category: Watanabe, N]]
+[[Category: Van Belkum MJ]]
-[[Category: Aminotransferase]]
-[[Category: Chloroplast]]
-[[Category: External aldimine]]
-[[Category: Ll-diaminopimelate]]
-[[Category: Lysine biosynthesis]]
-[[Category: Pyridoxal 5' phosphate]]
-[[Category: Pyridoxal phosphate]]
-[[Category: Transferase]]
-[[Category: Transit peptide]]